Browse Element(s) Details


OsAffx.30913.1.S1_at

Description tigr:9639.m00943
TID=OsAffx.30913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g099901/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09950NANA11+5327559..5328579Transposable element protein, putative, Retrotrans_gag
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30913.1.S1_at--882--2311Chr11:5353312..5353589 (25 bp)
AAAGTGCCTCCAGAGTGCCCTTACA
LOC_Os11g09990
OsAffx.30913.1.S1_at--642--3811Chr11:5353061..5353269 (25 bp)
CTCCTGTTCAGTTCAATCATTCTTC
NONE
OsAffx.30913.1.S1_at--788--5131Chr11:5352505..5352529 (25 bp)
GCAAATGTGCCTCGATGCAACTCTT
NONE
OsAffx.30913.1.S1_at--1074--651Chr11:5352491..5352515 (25 bp)
ATGCAACTCTTTCTCTGGTTCTGTT
NONE
OsAffx.30913.1.S1_at--975--7891Chr11:5352302..5352499 (25 bp)
GGTTCTGTTGTCCAGCATTATTACA
NONE
OsAffx.30913.1.S1_at--691--9871Chr11:5352281..5352305 (25 bp)
TACAGTATTCCTGCTTTAATTGTGG
NONE
OsAffx.30913.1.S1_at--920--7931Chr11:5352258..5352282 (25 bp)
GGATATTATGATCTTCACCCAGGGA
NONE
OsAffx.30913.1.S1_at--109--7611Chr11:5352095..5352261 (25 bp)
GGGAATTGCACAACCCAAGGCATAT
NONE
OsAffx.30913.1.S1_at--851--2891Chr11:5351583..5351607 (25 bp)
AAGGTCTTGACTTCTACCATTGTGT
NONE
OsAffx.30913.1.S1_at--1055--1731Chr11:5351568..5351592 (25 bp)
ACCATTGTGTATGTATGCGCGACGA
NONE
OsAffx.30913.1.S1_at--88--8851Chr11:5351522..5351546 (25 bp)
TGATCACTATGAGGATGCTCTTCCT
NONE
Target Sequence 
AAAGTGCCTCCAGAGTGCCCTTACAGCCTTACTGCTGATGCAATGACTTGTTTCTTGAACCACTATTCTCCTGTTCAGTT
CAATCATTCTTCTCTGGTGAAATACGGGGCATGGATCTCTAGTAATTATAAACAAGACATATCATGCACTGGAAATGGCA
CTGTTCATCATTTAGCAAATGTGCCTCGATGCAACTCTTTCTCTGGTTCTGTTGTCCAGCATTATTACAGTATTCCTGCT
TTAATTGTGGATATTATGATCTTCACCCAGGGAATTGCACAACCCAAGGCATATATCTATTTGAATGTGGGCAATGCTAG
AAAGTCTTACATTGTGAAACGGAGGAACCTGGAGAAGCGGTTGGTGCCGAGGCATTATGTTGCAGAAGCCCTTGCTGTGA
AGGGATTGATAAGAAAAGGTCTTGACTTCTACCATTGTGTATGTATGCGCGACGAAGTTTTTGTAGCAAAGTACATTGAT
CACTATGAGGATGCTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis