Browse Element(s) Details


OsAffx.30959.1.S1_at

Description tigr:9639.m01268
TID=OsAffx.30959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1377011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein
LOC_Os11g13730Os.47463.1.S1_x_at5/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13730Os.14491.2.S1_x_at4/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.27037.1.A1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.34537.1.S1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13750Os.52619.1.S1_at11/1111+7563442..7564248expressed protein
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein
LOC_Os11g13780NANA11+7573374..7574932retrotransposon protein, putative, unclassified
LOC_Os11g13790NANA11+7575645..7577337retrotransposon protein, putative, unclassified
LOC_Os11g13800Os.19345.1.S1_at11/1111+7579887..7583823expressed protein
LOC_Os11g13800Os.51061.1.S1_at1/1111+7579887..7583823expressed protein
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30959.1.S1_at--56--1791Chr11:7571761..7571785 (25 bp)
ACCGTCACCAGCTTAGCGAACACGA
LOC_Os11g13770
OsAffx.30959.1.S1_at--526--7091Chr11:7571758..7571782 (25 bp)
GTCACCAGCTTAGCGAACACGACGT
LOC_Os11g13770
OsAffx.30959.1.S1_at--463--1711Chr11:7571755..7571779 (25 bp)
ACCAGCTTAGCGAACACGACGTCGT
LOC_Os11g13770
OsAffx.30959.1.S1_at--306--4611Chr11:7571559..7571583 (25 bp)
GCGACGGGTCGTTCCAGGTGACCCT
LOC_Os11g13770
OsAffx.30959.1.S1_at--640--5731Chr11:7571515..7571539 (25 bp)
GACGTCCAGGGGTACAAGCTCCGGT
LOC_Os11g13770
OsAffx.30959.1.S1_at--915--3711Chr11:7571496..7571520 (25 bp)
TCCGGTACCGGAGCAACATCTACGG
LOC_Os11g13770
OsAffx.30959.1.S1_at--118--7851Chr11:7571493..7571517 (25 bp)
GGTACCGGAGCAACATCTACGGCAA
LOC_Os11g13770
OsAffx.30959.1.S1_at--117--9951Chr11:7571491..7571515 (25 bp)
TACCGGAGCAACATCTACGGCAACG
LOC_Os11g13770
OsAffx.30959.1.S1_at--770--431Chr11:7571479..7571503 (25 bp)
ATCTACGGCAACGTGCGCGCCGGCT
LOC_Os11g13770
OsAffx.30959.1.S1_at--544--4331Chr11:7571418..7571442 (25 bp)
CCATCGTCTGGGTCGGCATCCACGA
LOC_Os11g13770
OsAffx.30959.1.S1_at--863--4011Chr11:7571414..7571438 (25 bp)
CGTCTGGGTCGGCATCCACGACGTC
LOC_Os11g13770
Target Sequence 
ACCGTCACCAGCTTAGCGAACACGACGTCGTCGTCGGTGGCTGCCCTCGGCAGCAGTGGCATCATCGCCGGCGGCCGAGC
GGCGAACGCGTCGGCGAACACGACGGCGGCGGCGGAGCCGACGGTGTACGAGATGCTGGGGAAGTACGGGTTCCCGCCGG
GGATCCTGCCGGCGGGCGCGCAGGGGTACACGCTGGACGCCGGCGACGGGTCGTTCCAGGTGACCCTCCCCGGCGACTGC
GTCGTCGACGTCCAGGGGTACAAGCTCCGGTACCGGAGCAACATCTACGGCAACGTGCGCGCCGGCTCCATCGACGGCCT
CGACGGCGTCAGCGTCAAGATCGCCATCGTCTGGGTCGGCATCCACGACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis