Browse Element(s) Details


OsAffx.30994.1.S1_at

Description tigr:9639.m01439
TID=OsAffx.30994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1550011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15440OsAffx.448.1.S1_x_at1/1111+8746649..8750436retrotransposon protein, putative, unclassified
LOC_Os11g15450NANA11+8750710..8754780retrotransposon protein, putative, unclassified
LOC_Os11g15460OsAffx.30993.1.S1_at11/1111+8756938..8758306Ank repeat PF|00023 containing protein, putative
LOC_Os11g15470OsAffx.7119.1.S1_at11/1111+8759232..8759669hypothetical protein
LOC_Os11g15480NANA11+8761741..8762363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15490OsAffx.18864.1.S1_at11/1111+8771037..8771682hypothetical protein
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30994.1.S1_at--513--6131Chr11:8776875..8776899 (25 bp)
GAGGCTTTTAGGATTCTTGGGAACT
LOC_Os11g15500
OsAffx.30994.1.S1_at--292--10851Chr11:8776891..8776915 (25 bp)
TTGGGAACTTGCCTTCTCTCATTAC
LOC_Os11g15500
OsAffx.30994.1.S1_at--708--9591Chr11:8776909..8776933 (25 bp)
TCATTACTCTCTGGCTGTGGACAAA
LOC_Os11g15500
OsAffx.30994.1.S1_at--558--7551Chr11:8777047..8777071 (25 bp)
GGGCCATGCCTAAGCTTCAGAAGTT
LOC_Os11g15500
OsAffx.30994.1.S1_at--688--5931Chr11:8777095..8777119 (25 bp)
GAGCAGGTCCTCCATCTGGAGATTT
LOC_Os11g15500
OsAffx.30994.1.S1_at--976--31Chr11:8777130..8777154 (25 bp)
ATTGAACACATATCTTCCCTCAGGC
LOC_Os11g15500
OsAffx.30994.1.S1_at--375--3491Chr11:8777150..8777174 (25 bp)
CAGGCATCTCCGTATCGGTATAGAT
LOC_Os11g15500
OsAffx.30994.1.S1_at--1098--6191Chr11:8777211..8777235 (25 bp)
GAGGCTGCTGTCAGGAATGTTACCA
LOC_Os11g15500
OsAffx.30994.1.S1_at--992--931Chr11:8777223..8777247 (25 bp)
AGGAATGTTACCAGTGTCCTTCCCA
LOC_Os11g15500
OsAffx.30994.1.S1_at--126--3651Chr11:8777241..8777265 (25 bp)
CTTCCCAGCAATCTCCAAGTTGAAA
LOC_Os11g15500
OsAffx.30994.1.S1_at--1042--5351Chr11:8777370..8777394 (25 bp)
GAAGATGGAAGCTCACTCAAGACAA
LOC_Os11g15500
Target Sequence 
GAGGCTTTTAGGATTCTTGGGAACTTGCCTTCTCTCATTACTCTCTGGCTGTGGACAAAAACAGTAGTCTCCAAGAGAAG
ATTTATCATACATAATGTTGGATTCAAACATTTGAAAGAATTCTACTTTGGTTTTTGGAGGATTGAGATGGGGCCAATAA
AATTTGAGGTTGGGGCCATGCCTAAGCTTCAGAAGTTTCTTTTTGACATAAAAGCACAAGGAGCAGGTCCTCCATCTGGA
GATTTTGACATAGGCATTGAACACATATCTTCCCTCAGGCATCTCCGTATCGGTATAGATTGTATAGATGCAAGACCTTG
TGAGGTTGAGGTCACAGAGGCTGCTGTCAGGAATGTTACCAGTGTCCTTCCCAGCAATCTCCAAGTTGAAATCGAAAGAC
ACAGGGCAGGACAAATGGTAAAAGAAAAGATGGGGAGCACAGATCATGATGGTGAACAAAACAGGGGTATTGGTAAGCAT
CAGGAACAGGCAGTAGAAGATGGAAGCTCACTCAAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis