Browse Element(s) Details


OsAffx.31002.1.S1_at

Description tigr:9639.m01499
TID=OsAffx.31002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1657011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31002.1.S1_at--1002--4331Chr11:9163733..9163757 (25 bp)
CCATGGTGCCGAGGTGATTTTGTAT
LOC_Os11g16570
OsAffx.31002.1.S1_at--639--1991Chr11:9163680..9163704 (25 bp)
ACTCCTTTGCCGGTGATACAGAATT
LOC_Os11g16570
OsAffx.31002.1.S1_at--950--6471Chr11:9163651..9163675 (25 bp)
GATACCCAAGTTGCCGTGGACGTCC
LOC_Os11g16570
OsAffx.31002.1.S1_at--1051--5931Chr11:9163583..9163607 (25 bp)
GAGCAAGCTCCAGGACGCTATTGTT
LOC_Os11g16570
OsAffx.31002.1.S1_at--248--1771Chr11:9163534..9163558 (25 bp)
ACCGTCGTGGCCGTACGCAAGGAAG
LOC_Os11g16570
OsAffx.31002.1.S1_at--643--1071Chr11:9163492..9163516 (25 bp)
AGGGAGCTCCACGACGTTGCAGATA
LOC_Os11g16570
OsAffx.31002.1.S1_at--317--6671Chr11:9163478..9163501 (24 bp)
GTTGCAGATATTGTCGCCGTGGAAA
LOC_Os11g16570
OsAffx.31002.1.S1_at--333--511Chr11:9163357..9163381 (25 bp)
ATCGTCCTGGGCACACATGATGAAG
LOC_Os11g16570
OsAffx.31002.1.S1_at--581--9731Chr11:9163296..9163320 (25 bp)
TCAATGGTGTCGTAGTTGCTGTCCC
LOC_Os11g16570
OsAffx.31002.1.S1_at--545--8571Chr11:9163227..9163251 (25 bp)
TGGATATAGACGTCGCACATGCCCT
LOC_Os11g16570
OsAffx.31002.1.S1_at--1045--831Chr11:9162857..9163215 (25 bp)
ATGGCACCAAGAGCCGAAGCGTTTT
LOC_Os11g16570
Target Sequence 
CCATGGTGCCGAGGTGATTTTGTATGATTTCGACGAGGTTCATGTCGTGGAGGACTCCTTTGCCGGTGATACAGAATTTC
CTGATACCCAAGTTGCCGTGGACGTCCAAGCGGTGGCCGTGACCGAGCTCGAGCTCCATGGGTTGATGGAGAGCAAGCTC
CAGGACGCTATTGTTGATGTGGTCGGGAGCGAGGTCGACACCGTCGTGGCCGTACGCAAGGAAGATGTGATCATGGCTGA
GAGGGAGCTCCACGACGTTGCAGATATTGTCGCCGTGGAAAGCGAGGTCAACATCGTCCTGGGCACACATGATGAAGCAA
TGGCGATGATTGTGGCTGTGGCCGAGATGGAGCTCAATGGTGTCGTAGTTGCTGTCCCCGAGAGCGAGCTCAATGTCGTC
GTGGTTGTATGCGAGGTAGTCATGGATATAGACGTCGCACATGCCCTTCTACATCACCATGGCACCAAGAGCCGAAGCGT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis