Browse Element(s) Details


OsAffx.31011.1.S1_at

Description tigr:9639.m01552
TID=OsAffx.31011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1699011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16930OsAffx.12179.1.S1_at2/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16930OsAffx.12179.1.S1_x_at1/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16940Os.46306.1.S1_x_at1/1111+9379397..9379666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16950NANA11+9382753..9384277transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16960OsAffx.18888.1.S1_at10/1111+9386416..9387794enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g16970OsAffx.31010.1.S1_at11/1111+9388575..9389321expressed protein
LOC_Os11g16979NANA11+9393144..9394179NA
LOC_Os11g16990OsAffx.31011.1.S1_at11/1111+9395240..9395974hypothetical protein
LOC_Os11g17002NANA11+9400608..9400825NA
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17030OsAffx.18891.1.S1_at11/1111+9416048..9416443hypothetical protein
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31011.1.S1_at--618--891Chr11:9395812..9395836 (25 bp)
AGGCCGTCGAGCAAAGGCCTCGTCA
LOC_Os11g16990
OsAffx.31011.1.S1_at--466--1671Chr11:9395714..9395738 (25 bp)
AGCCGAGCTGGCTGCGTACCGCACG
LOC_Os11g16990
OsAffx.31011.1.S1_at--630--8511Chr11:9395572..9395596 (25 bp)
TGGAAGGAGGCCACCTTCGAGGCAC
LOC_Os11g16990
OsAffx.31011.1.S1_at--444--3331Chr11:9395561..9395585 (25 bp)
CACCTTCGAGGCACCGGAGGTGAGA
LOC_Os11g16990
OsAffx.31011.1.S1_at--1110--9091Chr11:9395472..9395496 (25 bp)
TGCTGCGGGACAAGGCGCCGTACCC
LOC_Os11g16990
OsAffx.31011.1.S1_at--1048--8871Chr11:9395442..9395466 (25 bp)
TGAGGTCGAAGCTGGTGCTCCGGTC
LOC_Os11g16990
OsAffx.31011.1.S1_at--849--5751Chr11:9395407..9395431 (25 bp)
GACGGGTCCACGTTCGGCGGCTACT
LOC_Os11g16990
OsAffx.31011.1.S1_at--428--1891Chr11:9395398..9395422 (25 bp)
ACGTTCGGCGGCTACTGGTACATGA
LOC_Os11g16990
OsAffx.31011.1.S1_at--483--8291Chr11:9395389..9395413 (25 bp)
GGCTACTGGTACATGACCGATTCCA
LOC_Os11g16990
OsAffx.31011.1.S1_at--916--671Chr11:9395377..9395401 (25 bp)
ATGACCGATTCCAGGTGCGACGGCA
LOC_Os11g16990
OsAffx.31011.1.S1_at--602--3931Chr11:9395270..9395294 (25 bp)
CCGTAAGAGCTTCTTCCCGGAGTCG
LOC_Os11g16990
Target Sequence 
AGGCCGTCGAGCAAAGGCCTCGTCACCACCTTCGCGGCCGGCGANGGCGGCTCGTTCTGCGACGACGTCGACAACGGCGG
CACGTCTGCGGCGGCGACAGCCGAGCTGGCTGCGTACCGCACGGCCGAGGCGGTCCGCGCGCTGTTCGACATGCCGTTCC
CGACCGCCGCCGCGGTCGCCGGCGACGTCAGGTCGTCCCTGGCGCTGGCGCTGGTGCTGGCGCACGACGACATGGCCGTC
TGGAAGGAGGCCACCTTCGAGGCACCGGAGGTGAGACTGAGGCGGGACGACGGCGGCGGCGGCGACCTCCCGCCGGCGCC
GCCGCCGTACGTCGCGGCGCTGCTGCGGGACAAGGCGCCGTACCCGATGATGAGGTCGAAGCTGGTGCTCCGGTCGGAGG
CCATGGACGGGTCCACGTTCGGCGGCTACTGGTACATGACCGATTCCAGGTGCGACGGCAGGGAGGAGGTGACCGGCGAG
GCCGCGGGCATCGTGACCACCTCCATCGGCAAGGTCCGCGACGGCGAGGCCTACGTCGCCACCCGTAAGAGCTTCTTCCC
GGAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis