Browse Element(s) Details


OsAffx.31047.1.S1_at

Description tigr:9639.m01736
TID=OsAffx.31047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1877010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18750OsAffx.18926.1.S1_x_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18760NANA11+10620323..10620881hypothetical protein
LOC_Os11g18770OsAffx.31047.1.S1_at10/1111+10626230..10635123PHD-finger family protein, expressed
LOC_Os11g18780OsAffx.20736.1.S1_at2/1111+10636453..10640667hypothetical protein
LOC_Os11g18780Os.27520.8.S1_x_at1/1111+10636453..10640667hypothetical protein
LOC_Os11g18780OsAffx.16528.1.S1_at1/1111+10636453..10640667hypothetical protein
LOC_Os11g18790OsAffx.10632.1.S1_at1/1111+10641446..10646562transposon protein, putative, unclassified
LOC_Os11g18790OsAffx.31760.1.S1_at1/1111+10641446..10646562transposon protein, putative, unclassified
LOC_Os11g18800NANA11+10648157..10649209hypothetical protein
LOC_Os11g18810OsAffx.30435.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.22699.1.S1_x_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.18375.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.16111.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18820OsAffx.18928.1.S1_at11/1111+10657001..10660190hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31047.1.S1_at--1157--2731Chr11:10628586..10628610 (25 bp)
AAGAAAAGATGCCAACCTTCCACCT
LOC_Os11g18770
OsAffx.31047.1.S1_at--364--10691NONE
TTCCACCTGATCTACCCATATATGA
NONE
OsAffx.31047.1.S1_at--37--3071Chr11:10627442..10627466 (25 bp)
AATCTCTATTTCATCCTTTGGTTGG
LOC_Os11g18770
OsAffx.31047.1.S1_at--775--6151Chr11:10627422..10627446 (25 bp)
GTTGGAAATCCTTTAGACGGGCAGT
LOC_Os11g18770
OsAffx.31047.1.S1_at--941--5751Chr11:10627407..10627431 (25 bp)
GACGGGCAGTCTCATGATTCAATCA
LOC_Os11g18770
OsAffx.31047.1.S1_at--1004--4871Chr11:10627353..10627377 (25 bp)
GCTATTGATGATTTTCTCCCTGTCC
LOC_Os11g18770
OsAffx.31047.1.S1_at--8--1391Chr11:10627059..10627342 (25 bp)
AGACCTTAAACTTGCTTATTCAGAG
LOC_Os11g18770
OsAffx.31047.1.S1_at--1075--2971Chr11:10627023..10627047 (25 bp)
AATGGGATATCCTTCTGTGGGTAAT
LOC_Os11g18770
OsAffx.31047.1.S1_at--337--1391Chr11:10626967..10626991 (25 bp)
AGCTAAATACTTGTTCTTTCTCCGT
LOC_Os11g18770
OsAffx.31047.1.S1_at--963--6711Chr11:10626955..10626979 (25 bp)
GTTCTTTCTCCGTAATCCATGGAAA
LOC_Os11g18770
OsAffx.31047.1.S1_at--631--6471Chr11:10626310..10626370 (25 bp)
GATAAAGTTTCCTCTGCTCATGCTT
LOC_Os11g18770
Target Sequence 
AAGAAAAGATGCCAACCTTCCACCTGATCTACCCATATATGATAATAATCAGGGGTGCTCGAATGGTGTAAAATCTCTAT
TTCATCCTTTGGTTGGAAATCCTTTAGACGGGCAGTCTCATGATTCAATCACAGCAATGTTTCCAACAAATAACAGTAGT
GCTATTGATGATTTTCTCCCTGTCCCGACAAGAAAAGACCTTAAACTTGCTTATTCAGAGCAGAAAGAGAAAATGGGATA
TCCTTCTGTGGGTAATGGTTGTGATGTAAATTTTGATGTGAATATGAAGCTAAATACTTGTTCTTTCTCCGTAATCCATG
GAAAAGGTAATGAGAGCACAAATAACAAAATGGACAATGCTGAGCACCTGATGGATGGTGACAGTGTGAATGCTACTGGA
GTAAGCTCTAGCAATGTGCATACTATTTCACATGTTTCTGGTGGTGTACGTAAAAGAAGTGTTGACGTGGCAAATTGGGA
TGATAAAGTTTCCTCTGCTCATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis