Browse Element(s) Details


OsAffx.31056.1.S1_x_at

Description tigr:9639.m01792
TID=OsAffx.31056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1924011/11amino acid transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19210Os.56337.1.S1_at11/1111+10950335..10956302Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g19220Os.52530.1.S1_at11/1111+10955801..10959863Thioredoxin-like protein 4B, putative, expressed
LOC_Os11g19230OsAffx.19542.3.S1_x_at2/1111+10970026..10975183retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g19240OsAffx.31056.1.S1_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19240OsAffx.31056.1.S1_x_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19250Os.18832.1.S1_at11/1111+10990647..11000910LOC495115 protein, putative, expressed
LOC_Os11g19260OsAffx.18940.1.S1_at11/1111+11002451..11002794hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31056.1.S1_x_at--339--331Chr11:10977751..10977775 (25 bp)
ATGAAGGACCCCTCGGCGTTCACCA
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--1049--4631Chr11:10977766..10977790 (25 bp)
GCGTTCACCAGGGTGTCCGTCGCGA
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--1152--10631Chr11:10977793..10977817 (25 bp)
TTCGCCGTGGTCACCGCGCTGTACA
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--149--10631Chr11:10977829..10977853 (25 bp)
TTCGTCGGCGCGAGCATGTTCGGCC
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--925--4491Chr11:10977898..10977922 (25 bp)
GCCGTCACCAGGATCGCGCTCTGGG
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--577--9471Chr11:10977917..10977941 (25 bp)
TCTGGGCGACCGTGCTCACGCCGGT
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--252--7831Chr11:10977939..10977963 (25 bp)
GGTCACCAAGTACGCGCTCGAGTTC
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--760--7011Chr11:10978092..10978116 (25 bp)
GTACTTCCAGTACGTGCTCAGCCTC
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--139--7711Chr11:10978120..10978144 (25 bp)
GGGTCGCTCGTCAGCGTGGCCATCT
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--872--1631Chr11:10978132..10978156 (25 bp)
AGCGTGGCCATCTCGATCATCTTCC
LOC_Os11g19240
OsAffx.31056.1.S1_x_at--104--4611Chr11:10978162..10978186 (25 bp)
GCGTTCTACCTCAAGATCCGGTGGG
LOC_Os11g19240
Target Sequence 
ATGAAGGACCCCTCGGCGTTCACCAGGGTGTCCGTCGCGAGCTTCGCCGTGGTCACCGCGCTGTACACGGCGCTGGCGTT
CGTCGGCGCGAGCATGTTCGGCCCGAGCGTCAGCTCCCAGATCACGCTCAGCATGCCGCCGGGGCTCGCCGTCACCAGGA
TCGCGCTCTGGGCGACCGTGCTCACGCCGGTCACCAAGTACGCGCTCGAGTTCGCGCCCTTCGCCATCCAGCTCGAGCGC
CACCTGCCGGCGGCCATGTCGCCGCGCGCGCGCACGCTCGTCCGCGGCGGCGTCGGCTCGGCGGCGCTGCTGCTCATCCT
GGCGCTGGCGCTCTCCGTGCCGTACTTCCAGTACGTGCTCAGCCTCACCGGGTCGCTCGTCAGCGTGGCCATCTCGATCA
TCTTCCCCTGCGCGTTCTACCTCAAGATCCGGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis