Browse Element(s) Details


OsAffx.31082.1.S1_at

Description tigr:9639.m01961
TID=OsAffx.31082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g21870Os.45173.1.S1_x_at1/1111+12075131..12078258retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21880OsAffx.18924.4.S1_at10/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.18924.2.S1_x_at7/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.19842.1.S1_at2/1111+12078314..12079268hypothetical protein
LOC_Os11g21890OsAffx.411.1.S1_at2/1111+12082901..12087291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g21900OsAffx.13681.1.S1_at1/1111+12091952..12093460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21910Os.39431.1.S1_x_at1/1111+12097925..12099198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21920OsAffx.20497.1.S1_at1/1111+12099832..12100218transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g21930OsAffx.31082.1.S1_at11/1111+12102053..12102473hypothetical protein
LOC_Os11g21940NANA11+12107519..12109146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21950NANA11+12109551..12111742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21960Os.9209.2.S1_at9/1111+12117316..12126851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21960OsAffx.24242.2.S1_at8/1111+12117316..12126851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21960Os.31929.11.S1_x_at1/1111+12117316..12126851retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31082.1.S1_at--612--4971Chr11:12102416..12102440 (25 bp)
GCATCTAGCCCGGTTGGCCATGAGC
LOC_Os11g21930
OsAffx.31082.1.S1_at--367--451Chr11:12102414..12102438 (25 bp)
ATCTAGCCCGGTTGGCCATGAGCTG
LOC_Os11g21930
OsAffx.31082.1.S1_at--643--1651Chr11:12102414..12102434 (21 bp)
AGCCCGGTTGGCCATGAGCTGCTTC
LOC_Os11g21930
OsAffx.31082.1.S1_at--603--4252Chr01:4230351..4230512 (25 bp)
CCGGTTGGCCATGAGCTGCTTCTTC
NONE
OsAffx.31082.1.S1_at--52--7931Chr11:12102261..12102429 (25 bp)
GGTTGGCCATGAGCTGCTTCTTCCC
LOC_Os11g21930
OsAffx.31082.1.S1_at--10--7251Chr11:12102130..12102224 (25 bp)
GTCCCTCGGGCCATAATCGTGACAA
LOC_Os11g21930
OsAffx.31082.1.S1_at--878--4172Chr01:22395368..22395387 (20 bp)
CCCTCGGGCCATAATCGTGACAAGC
NONE
OsAffx.31082.1.S1_at--724--4432Chr01:22395370..22395394 (25 bp)
GCCATAATCGTGACAAGCCCGAGCT
NONE
OsAffx.31082.1.S1_at--159--372Chr01:22395373..22395397 (25 bp)
ATAATCGTGACAAGCCCGAGCTCCG
NONE
OsAffx.31082.1.S1_at--615--5891Chr11:12102101..12102125 (25 bp)
GAGCTCCGAAGCTCCGCCCAAGGAG
LOC_Os11g21930
OsAffx.31082.1.S1_at--414--2651Chr11:12102093..12102117 (25 bp)
AAGCTCCGCCCAAGGAGGTCACCGT
LOC_Os11g21930
Target Sequence 
GCATCTAGCCCGGTTGGCCATGAGCTGCTTCTTCCCGGCTCCACCGCCGCCGCGGAACTTCGTCGTTCCGCCGTCCCTCG
GGCCATAATCGTGACAAGCCCGAGCTCCGAAGCTCCGCCCAAGGAGGTCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis