Browse Element(s) Details


OsAffx.31083.4.S1_x_at

Description tigr:9629.m03435
TID=OsAffx.31083.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3641011/11hypothetical protein
LOC_Os11g462805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36380NANA1+20514902..20515540hypothetical protein
LOC_Os01g36390Os.47996.1.A1_at10/111+20518897..20523779MCM2/3/5 family protein, expressed
LOC_Os01g36400Os.10217.1.S1_a_at1/111+20531705..20535305transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g36410OsAffx.31083.4.S1_x_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.4.S1_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.5.S1_s_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.1.S1_x_at1/111+20539742..20540920hypothetical protein
LOC_Os01g36420NANA1+20541332..20544660transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31083.4.S1_x_at--1081--3672Chr01:20540500..20540524 (25 bp)
CTTTGCAGACGCAGGTCAGTGGCTT
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--1145--10732Chr01:20540502..20540526 (25 bp)
TTGCAGACGCAGGTCAGTGGCTTTC
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--875--3412Chr01:20540505..20540529 (25 bp)
CAGACGCAGGTCAGTGGCTTTCCAG
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--692--1092Chr01:20540517..20540541 (25 bp)
AGTGGCTTTCCAGACGGAGGCAGCA
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--791--1473Chr08:7317077..7317101 (25 bp)
AGCAACGGTCGGGTTCGTCGCGTCT
NONE
OsAffx.31083.4.S1_x_at--828--7232Chr08:7317093..7317117 (25 bp)
GTCGCGTCTCGTCGCTCCGGGCAGA
NONE
OsAffx.31083.4.S1_x_at--646--7151Chr01:20540827..20540851 (25 bp)
GTCTAGGGTGCTTGGGCCCACAGAT
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--128--7331Chr01:20540834..20540858 (25 bp)
GTGCTTGGGCCCACAGATCAGAGAA
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--648--10831Chr01:20540838..20540862 (25 bp)
TTGGGCCCACAGATCAGAGAAGTAC
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--177--7571Chr01:20540840..20540864 (25 bp)
GGGCCCACAGATCAGAGAAGTACAG
LOC_Os01g36410
OsAffx.31083.4.S1_x_at--338--4372Chr05:12233814..12233833 (20 bp)
CCACAGATCAGAGAAGTACAGGAAT
NONE
Target Sequence 
CTTTGCAGACGCAGGTCAGTGGCTTTCCAGACGGAGGCAGCAACGGTCGGGTTCGTCGCGTCTCGTCGCTCCGGGCAGAG
GGGCGGCGTCGGTTGGGCGCGGCGGCTGCGAGGGCAGCGCTGGGCGCGGCAGGGCATCGGGCAGAGGCGGGGCAGAGGCG
TCGTCAGCTTTGCACAGTCTTGCAGCGAGATTCGCGGGCAGAGGAGGAATGGGCGGCTTGGGGGCGACGACTTTCGGCTC
GCATCCTATGTGTTCGATGAAATGTCTGCAAGGAAAGAGATGGGAAAGAGGAGAGAGGGATGGGGTGCTGGGCCACTGGC
AGGTGGGGTCTAGGGTGCTTGGGCCCACAGATCAGAGAAGTACAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31083.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis