Browse Element(s) Details


Os.47996.1.A1_at

Description gb:CR278698
DB_XREF= gi:44665264
DB_XREF=CR278698
CLONE=p895e03p3
TID=Os.47996.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cdc21 protein (OSJNBa0051H17.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3639010/11MCM2/3/5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36360OsAffx.22947.1.S1_x_at11/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.2.S1_x_at4/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.5.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.3.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36370NANA1+20496356..20503961transposon protein, putative, Mutator sub-class
LOC_Os01g36380NANA1+20514902..20515540hypothetical protein
LOC_Os01g36390Os.47996.1.A1_at10/111+20518897..20523779MCM2/3/5 family protein, expressed
LOC_Os01g36400Os.10217.1.S1_a_at1/111+20531705..20535305transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g36410OsAffx.31083.4.S1_x_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.4.S1_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.5.S1_s_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.1.S1_x_at1/111+20539742..20540920hypothetical protein
LOC_Os01g36420NANA1+20541332..20544660transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47996.1.A1_at--436--8471Chr01:20522860..20522884 (25 bp)
TGGCCCGAATGCGATTCTCTGAAAT
LOC_Os01g36390
Os.47996.1.A1_at--371--1311Chr01:20522990..20523014 (25 bp)
AGATGTTGTAGAGGCCTTCAGGCTT
LOC_Os01g36390
Os.47996.1.A1_at--783--911Chr01:20523009..20523033 (25 bp)
AGGCTTCTCGAAGTTGCCATGCAGC
LOC_Os01g36390
Os.47996.1.A1_at--740--5151Chr01:20523039..20523059 (21 bp)
GCAACTGATCATGCCACTGGTACAA
LOC_Os01g36390
Os.47996.1.A1_at--516--891Chr01:20523204..20523228 (25 bp)
AGGCGGGACAATCTCGTTGCAGCAA
LOC_Os01g36390
Os.47996.1.A1_at--326--5911Chr01:20523398..20523422 (25 bp)
GAGCTCTATGGAAGTTCATCTGCAT
LOC_Os01g36390
Os.47996.1.A1_at--349--4451Chr01:20523589..20523613 (25 bp)
GCCTTATTATTTGCGATCTCTCTAG
LOC_Os01g36390
Os.47996.1.A1_at--598--4631Chr01:20523601..20523625 (25 bp)
GCGATCTCTCTAGCTAATGTTCTGA
LOC_Os01g36390
Os.47996.1.A1_at--450--3871NONE
CTGATCCGTTGTTAGAGCTCTCAAT
NONE
Os.47996.1.A1_at--365--5991Chr01:20523649..20523673 (25 bp)
GAGACTGCTTACACATCGGACTTAT
LOC_Os01g36390
Os.47996.1.A1_at--925--731Chr01:20523699..20523723 (25 bp)
ATGTTTCTTGTTACGGTTGCTTACA
LOC_Os01g36390
Target Sequence 
TGGCCCGAATGCGATTCTCTGAAATGGTTGAAGTACAAGATGTTGTAGAGGCCTTCAGGCTTCTCGAAGTTGCCATGCAG
CAATCGGCAACTGATCATGCCACTGGTACAATCGATATGGATCTTATCATGACTGGAATATCTGCGAGCGAAAGGCAGAG
GCGGGACAATCTCGTTGCAGCAACCCGCAACCTTGTGATGGAGAAAATGCAGCNTTGGAGGGCCCTCAGTGCGAATGATT
GAGTTGCTGGAAGAAATTAGGAAGCAGAGCTCTATGGAAGTTCATCTGCATGATNTNNGNNGNNNNNNTNGNNNNCNNNN
NNNNNANNGNGCCGTAGTCATCCATGGAGACAGCGTCAAGAGGGTCTGATGCCTTATTATTTGCGATCTCTCTAGCTAAT
GTTCTGATCCGTTGTTAGAGCTCTCAATTGGAGACTGCTTACACATCGGACTTATTGTCTAACTGTATAATTTTTAGATA
ATGTTTCTTGTTACGGTTGCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47996.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis