Browse Element(s) Details


OsAffx.31110.1.S1_at

Description tigr:9639.m02171
TID=OsAffx.31110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2455011/11BTB/POZ domain containing protein
LOC_Os06g391701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed
LOC_Os11g24550OsAffx.31110.1.S1_at11/1111+13508561..13509685BTB/POZ domain containing protein
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31110.1.S1_at--474--8191Chr11:13509093..13509117 (25 bp)
GGAAGAACCAATCCAGCGGCGACGT
LOC_Os11g24550
OsAffx.31110.1.S1_at--694--1431Chr11:13509096..13509120 (25 bp)
AGAACCAATCCAGCGGCGACGTCTT
LOC_Os11g24550
OsAffx.31110.1.S1_at--19--4611Chr11:13509111..13509135 (25 bp)
GCGACGTCTTCATCGAGGTCCAGGG
LOC_Os11g24550
OsAffx.31110.1.S1_at--841--6751Chr11:13509142..13509166 (25 bp)
GTTCACGGCGCACCGGTGGATGCTC
LOC_Os11g24550
OsAffx.31110.1.S1_at--24--4092Chr11:13509238..13509262 (25 bp)
CGACGCCACCAAGAACACAATGATG
LOC_Os11g24550
OsAffx.31110.1.S1_at--146--5511Chr11:13509250..13509274 (25 bp)
GAACACAATGATGACGCTGCGCGTC
LOC_Os11g24550
OsAffx.31110.1.S1_at--620--4152Chr11:13509356..13509380 (25 bp)
CGCGCCCGCGACACGAAGGAGAAGG
LOC_Os11g24550
OsAffx.31110.1.S1_at--336--971Chr11:13509482..13509506 (25 bp)
AGGAGCCTGAGCGTCCTCACGGTGG
LOC_Os11g24550
OsAffx.31110.1.S1_at--345--1451Chr11:13509528..13509552 (25 bp)
AGAAGCACGGATGCCGCGTGCTCAA
LOC_Os11g24550
OsAffx.31110.1.S1_at--201--3911Chr11:13509563..13509587 (25 bp)
CTGGACTTCCTCTCGTGCAAGAGGA
LOC_Os11g24550
OsAffx.31110.1.S1_at--758--8531Chr11:13509609..13509633 (25 bp)
TGGACGATGACTTCCGTCTGCTCAC
LOC_Os11g24550
Target Sequence 
GGAAGAACCAATCCAGCGGCGACGTCTTCATCGAGGTCCAGGGGAAGACGTTCACGGCGCACCGGTGGATGCTCGCGGCG
AGATCGCCGGTCATGGCGGCCGAGCTCTCGTCATCCGACTCCGACGACGCGGCCTACACCGACGCCGACGCCACCAAGAA
CACAATGATGACGCTGCGCGTCGACGACGACATGGACGCCGAGACGTTCAGGGCGCTGCTCCACTTCATCTACACCGACG
CGCTGCCGCCGCCGCCCCAGCCCCGCGCCCGCGACACGAAGGAGAAGGAGGACGAGGCGGCGGCGGCCGAGGCGGCGAGG
CGGCTGCACGCGGCGGCGGCGAGGTACGGGATGGAGAGGCTGCAGCTGATGTGCGAGGACGCGCTGTGCAGGAGCCTGAG
CGTCCTCACGGTGGCGTCGACGCTGGTGTTCGCGGAGAAGCACGGATGCCGCGTGCTCAAGGCGGCGTGCCTGGACTTCC
TCTCGTGCAAGAGGAAGCTGAGGCAGGTGACGAGGCTGGACGATGACTTCCGTCTGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis