Browse Element(s) Details


OsAffx.31144.1.S1_at

Description tigr:9639.m02392
TID=OsAffx.31144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2680011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed
LOC_Os11g26760Os.53210.1.S1_at10/1111+14827503..14828391Dehydrin family protein, expressed
LOC_Os11g26770OsAffx.30910.1.S1_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.1.S1_x_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.18770.1.S1_s_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.2.S1_at2/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26780Os.51718.1.S1_at11/1111+14835926..14836892Dehydrin RAB 16B, putative, expressed
LOC_Os11g26790Os.12633.1.S1_s_at11/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26790Os.12633.1.S1_at10/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26800OsAffx.31144.1.S1_at11/1111+14844504..14847674hypothetical protein
LOC_Os11g26800OsAffx.9043.3.S1_at1/1111+14844504..14847674hypothetical protein
LOC_Os11g26810NANA11+14872287..14872796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31144.1.S1_at--916--8871Chr11:14847482..14847564 (25 bp)
TGATGGATATCAAACCGCGGTTGGT
LOC_Os11g26800
OsAffx.31144.1.S1_at--1096--7711Chr11:14847452..14847474 (23 bp)
GGGTGGCCAACAGTATTGCTATGAC
LOC_Os11g26800
OsAffx.31144.1.S1_at--464--6071Chr11:14847254..14847278 (25 bp)
GAGTTCATGGAAGCTTGCGTTGCTA
LOC_Os11g26800
OsAffx.31144.1.S1_at--298--5391Chr11:14847245..14847269 (25 bp)
GAAGCTTGCGTTGCTACGTACGAGA
LOC_Os11g26800
OsAffx.31144.1.S1_at--686--1351Chr11:14847116..14847140 (25 bp)
AGAGAGGCCCTCGTGATCAACAGTA
LOC_Os11g26800
OsAffx.31144.1.S1_at--639--9851Chr11:14847093..14847117 (25 bp)
TACACAACTTGACAGCTTGGCTCGG
LOC_Os11g26800
OsAffx.31144.1.S1_at--591--8491Chr11:14847080..14847100 (21 bp)
TGGCTCGGCTGCTTTGGTCGGCCAT
LOC_Os11g26800
OsAffx.31144.1.S1_at--223--5531Chr11:14844663..14844687 (25 bp)
GAAACACAATGACACCGTCGAAGAA
LOC_Os11g26800
OsAffx.31144.1.S1_at--247--8631Chr11:14844635..14844659 (25 bp)
TGGTGGAGCACCGTAGCCAGCAATC
LOC_Os11g26800
OsAffx.31144.1.S1_at--540--6971Chr11:14844623..14844647 (25 bp)
GTAGCCAGCAATCACCAAAACACAG
LOC_Os11g26800
OsAffx.31144.1.S1_at--152--5751Chr11:14844570..14844594 (25 bp)
GACGGCGACGAGACAACGTGACGCA
LOC_Os11g26800
Target Sequence 
TGATGGATATCAAACCGCGGTTGGTGGGAAGAGGGTGGCCAACAGTATTGCTATGACAGAGGGAGTGCTGGTCACTGAGT
TCATGGAAGCTTGCGTTGCTACGTACGAGAGGGTGTTCAGGGAGACAAGAGAGGCCCTCGTGATCAACAGTACACAACTT
GACAGCTTGGCTCGGCTGCTTTGGTCGGCCATGTCGTCGAGAAAGAAACACAATGACACCGTCGAAGAAAGCTGGTGGAG
CACCGTAGCCAGCAATCACCAAAACACAGAGGGGAGGAGGTCGGCAGCGGCCATGCGGACGGCGACGAGACAACGTGACG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis