Browse Element(s) Details


OsAffx.30910.1.S1_at

Description tigr:9639.m02389
TID=OsAffx.30910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2677011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26730OsAffx.19031.1.S1_at11/1111+14816284..14817059hypothetical protein
LOC_Os11g26730OsAffx.23391.1.S1_at1/1111+14816284..14817059hypothetical protein
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed
LOC_Os11g26760Os.53210.1.S1_at10/1111+14827503..14828391Dehydrin family protein, expressed
LOC_Os11g26770OsAffx.30910.1.S1_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.1.S1_x_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.18770.1.S1_s_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.2.S1_at2/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26780Os.51718.1.S1_at11/1111+14835926..14836892Dehydrin RAB 16B, putative, expressed
LOC_Os11g26790Os.12633.1.S1_s_at11/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26790Os.12633.1.S1_at10/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26800OsAffx.31144.1.S1_at11/1111+14844504..14847674hypothetical protein
LOC_Os11g26800OsAffx.9043.3.S1_at1/1111+14844504..14847674hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30910.1.S1_at--468--8391Chr11:14831321..14831345 (25 bp)
GGCGACATCTGTTGCACAGTATCAA
LOC_Os11g26770
OsAffx.30910.1.S1_at--888--6211Chr11:14831311..14831335 (25 bp)
GTTGCACAGTATCAAAAAGAACTTC
LOC_Os11g26770
OsAffx.30910.1.S1_at--215--5571Chr11:14831197..14831221 (25 bp)
GAAAGTTCTAATGGATGTGTTGGAG
LOC_Os11g26770
OsAffx.30910.1.S1_at--892--7832Chr11:14831161..14831185 (25 bp)
GGTAAAGTATCAATCAGAGTTCCTC
LOC_Os11g26770
OsAffx.30910.1.S1_at--786--6892Chr11:14831155..14831179 (25 bp)
GTATCAATCAGAGTTCCTCAGGTCA
LOC_Os11g26770
OsAffx.30910.1.S1_at--321--1072Chr11:14831144..14831168 (25 bp)
AGTTCCTCAGGTCATAAAAGGTCCA
LOC_Os11g26770
OsAffx.30910.1.S1_at--1027--3732Chr11:14831139..14831163 (25 bp)
CTCAGGTCATAAAAGGTCCAAAGAA
LOC_Os11g26770
OsAffx.30910.1.S1_at--766--6431Chr11:14831109..14831133 (25 bp)
GATCAAAAACTGTACTTCTAAAGAA
LOC_Os11g26770
OsAffx.30910.1.S1_at--729--5572Chr11:14831075..14831099 (25 bp)
GAAAGGAAATGCTGCTAAGAAAAAA
LOC_Os11g26770
OsAffx.30910.1.S1_at--591--1411Chr11:14830952..14830976 (25 bp)
AGAAATCAACAGACAATGGAGAAAT
LOC_Os11g26770
OsAffx.30910.1.S1_at--1026--5971Chr11:14830934..14830958 (25 bp)
GAGAAATGATTCAAGATCCAGATGA
LOC_Os11g26770
Target Sequence 
GGCGACATCTGTTGCACAGTATCAAAAAGAACTTCTTGATGATATGGAAAAAGCTATAGACAAGTTGGACCTAGAAGCAG
ATAATTCACTGAGCAAAATACACACCAAAACTTATGAGGTTTCTGAAAGTTCTAATGGATGTGTTGGAGACATATTAAAA
GGTAAAGTATCAATCAGAGTTCCTCAGGTCATAAAAGGTCCAAAGAATAAAAGATCAAAAACTGTACTTCTAAAGAAGAA
AGGGAAGAAAGGAAATGCTGCTAAGAAAAAAGGAGAAGATCCAAAGAAATCAACAGACAATGGAGAAATGATTCAAGATC
CAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis