Browse Element(s) Details


OsAffx.9043.3.S1_at

Description tigr:9629.m03285
TID=OsAffx.9043.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g268001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed
LOC_Os11g26760Os.53210.1.S1_at10/1111+14827503..14828391Dehydrin family protein, expressed
LOC_Os11g26770OsAffx.30910.1.S1_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.1.S1_x_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.18770.1.S1_s_at11/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26770OsAffx.30910.2.S1_at2/1111+14830705..14833547transposon protein, putative, unclassified
LOC_Os11g26780Os.51718.1.S1_at11/1111+14835926..14836892Dehydrin RAB 16B, putative, expressed
LOC_Os11g26790Os.12633.1.S1_s_at11/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26790Os.12633.1.S1_at10/1111+14842429..14843405Dehydrin family protein, expressed
LOC_Os11g26800OsAffx.31144.1.S1_at11/1111+14844504..14847674hypothetical protein
LOC_Os11g26800OsAffx.9043.3.S1_at1/1111+14844504..14847674hypothetical protein
LOC_Os11g26810NANA11+14872287..14872796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9043.3.S1_at--413--5291NONE
GAATGGTGCACTGTGCTGTTTGATA
NONE
OsAffx.9043.3.S1_at--738--7771NONE
GGTGCACTGTGCTGTTTGATAGTAC
NONE
OsAffx.9043.3.S1_at--1048--10691Chr01:19667476..19667500 (25 bp)
TTGCCTGCTTCTTGCAGTCTTTCTT
NONE
OsAffx.9043.3.S1_at--1002--10551Chr01:19667468..19667492 (25 bp)
TTCTTGCAGTCTTTCTTGCTTGCTG
NONE
OsAffx.9043.3.S1_at--34--4931Chr01:19667451..19667475 (25 bp)
GCTTGCTGCTGGCTGCCCTCGAGTA
NONE
OsAffx.9043.3.S1_at--1112--8471Chr01:19667442..19667466 (25 bp)
TGGCTGCCCTCGAGTACTAGATGAG
NONE
OsAffx.9043.3.S1_at--1006--8871Chr01:19667125..19667445 (25 bp)
TGAGGAGGATTCTGTTGAGTGTAAT
NONE
OsAffx.9043.3.S1_at--936--10351Chr01:19667066..19667090 (25 bp)
TTTTTTCAATTATCAGGCCATGTCG
NONE
OsAffx.9043.3.S1_at--753--3132Chr11:14845792..14845888 (25 bp)
AATTATCAGGCCATGTCGTCAAGAA
LOC_Os11g26800
OsAffx.9043.3.S1_at--767--9631Chr01:19667054..19667078 (25 bp)
TCAGGCCATGTCGTCAAGAAAGTAT
NONE
OsAffx.9043.3.S1_at--370--8591NONE
TGGTACCAATGTGGATGATACATCT
NONE
Target Sequence 
GAATGGTGCACTGTGCTGTTTGATAGTACTCTATTATCAATTTGTTATTGTGTGCCTCGGCTGATTCCTGGACGAGGATT
TAACGCACATTGGCTGCTTGCCTGCTTCTTGCAGTCTTTCTTGCTTGCTGCTGGCTGCCCTCGAGTACTAGATGAGGAGG
ATTCTGTTGAGTGTAATTTATATGAGTTAAACCACTATAATAATGTTAACTTTTTTTCAATTATCAGGCCATGTCGTCAA
GAAAGTATGCATCTTGGTAGAGAGAAAAGGAAAAAAAGGAAAAGGGTGGATGACTTAATAGAATCTCAGATGGGGGCAAT
GGACAAATTTTTAAGGGATAACATGGGCATGACAAGGAACCTAGATGAGTTGGCTATAGTCGTTGTGGATGAAGCAAGTG
ACATGATCATTGAAGATAAGGGCCCCATATCTACAGAAGAAATCAACATGAATGAGGATGGTACCAATGTGGATGATACA
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9043.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis