Browse Element(s) Details


OsAffx.31207.1.S1_at

Description tigr:9639.m02691
TID=OsAffx.31207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2977011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29730OsAffx.17542.1.S1_at2/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730Os.6901.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730OsAffx.6081.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29740OsAffx.7250.1.S1_at11/1111+16749342..16749860expressed protein
LOC_Os11g29750Os.52639.1.S1_at4/1111+16757199..16762215E1-E2 ATPase family protein
LOC_Os11g29760OsAffx.19072.1.S1_at11/1111+16766068..16766564hypothetical protein
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31207.1.S1_at--77--6051Chr11:16771153..16771177 (25 bp)
GAGATAGCGCTCTTTGTCAAGAAAT
LOC_Os11g29770
OsAffx.31207.1.S1_at--481--3151Chr11:16771038..16771062 (25 bp)
AATTCTACGAGTGTCATGAGCCCAG
LOC_Os11g29770
OsAffx.31207.1.S1_at--1076--5871Chr11:16771021..16771045 (25 bp)
GAGCCCAGACATTTCATAGTTGATT
LOC_Os11g29770
OsAffx.31207.1.S1_at--185--2191Chr11:16770953..16770977 (25 bp)
ACACAGGCATCACAAGCGCGAGCGA
LOC_Os11g29770
OsAffx.31207.1.S1_at--995--5511Chr11:16770930..16770954 (25 bp)
GAAAAGGCCATGCTCACATCGGGAT
LOC_Os11g29770
OsAffx.31207.1.S1_at--972--4031Chr11:16770893..16770917 (25 bp)
CGATGACTTCGGGTCAAGCTCAAGT
LOC_Os11g29770
OsAffx.31207.1.S1_at--286--8911Chr11:16770866..16770890 (25 bp)
TGAAGAGGGAACGACCACCTTCGCC
LOC_Os11g29770
OsAffx.31207.1.S1_at--861--2151Chr11:16770820..16770844 (25 bp)
ACACCTAGGCTCTTCAACTATTCAA
LOC_Os11g29770
OsAffx.31207.1.S1_at--409--5771Chr11:16770790..16770814 (25 bp)
GACGATGCTTCTATATGTCTCATGG
LOC_Os11g29770
OsAffx.31207.1.S1_at--706--9971Chr11:16770750..16770774 (25 bp)
TACCTTCCTCGCTTAAGTCATTTAA
LOC_Os11g29770
OsAffx.31207.1.S1_at--698--7931Chr11:16770650..16770674 (25 bp)
GGATTCATTGCCACACTTGAGTGAG
LOC_Os11g29770
Target Sequence 
GAGATAGCGCTCTTTGTCAAGAAATTTGGAAGATTCATGAGAAGAAGCGGTTTCTTCAAAGGGAGCTCTTTTAAGAGGTC
ATTCGACAAGTCAAGCGGAAGGCATTCCGCAAGGAAATTCTACGAGTGTCATGAGCCCAGACATTTCATAGTTGATTGCC
CGAATGTCAAGGAAGAAGAGAATGGTGATAAGAAGGAGAAACACAGGCATCACAAGCGCGAGCGAAAAGGCCATGCTCAC
ATCGGGATGATATTCGAGACCGATGACTTCGGGTCAAGCTCAAGTGATGAAGAGGGAACGACCACCTTCGCCGTCAAGCC
TACATCACCTCCTACACCTAGGCTCTTCAACTATTCAAGTGATGACGATGCTTCTATATGTCTCATGGCAAAGGAGTCTA
AGGTACCTTCCTCGCTTAAGTCATTTAATATTGATCTTGTTAGCGATGGGGAAGAGGAGGTTGATAAGGCTATGGATGAG
GACTTTCTCAAGTACATAATCAAGGATTCATTGCCACACTTGAGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis