Browse Element(s) Details


OsAffx.31213.1.S1_x_at

Description tigr:9639.m02706
TID=OsAffx.31213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2992011/11NB-ARC domain containing protein, expressed
LOC_Os09g273509/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29890NANA11+16860802..16864298hypothetical protein
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein
LOC_Os11g29910OsAffx.7252.1.S1_at11/1111+16881166..16881880Plastocyanin-like domain containing protein
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0006952biological_processdefense response
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31213.1.S1_x_at--918--8072Chr09:16624826..16624850 (25 bp)
GGAGCTGCACCGTTGTTGAAATTTC
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--23--5932Chr09:16624861..16624885 (25 bp)
GAGCTTGCCTTGTTGGTGCTATTAA
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--1055--7111Chr11:16883093..16883117 (25 bp)
GTGCTATTAACTCAAGACCCAAGTG
LOC_Os11g29920
OsAffx.31213.1.S1_x_at--763--2432Chr09:16624906..16624930 (25 bp)
AAAAGAGATGACTTGCTACCGGCAT
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--307--9972Chr09:16624922..16624946 (25 bp)
TACCGGCATCCAAAAATCCATTCAC
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--368--132Chr09:16624941..16624965 (25 bp)
ATTCACCTCCTATATGATGGCACAA
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--81--2892Chr09:16625096..16625120 (25 bp)
AAGGGATCAAGCCAAGTGCAAGCAA
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--119--10231Chr11:16882818..16882842 (25 bp)
TATTCCAACCATCAGATCAGTCTTG
LOC_Os11g29920
OsAffx.31213.1.S1_x_at--269--2732Chr09:16625185..16625209 (25 bp)
AAGCAATTCTGCATTTACAAGCCAA
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--374--212Chr09:16625222..16625246 (25 bp)
ATTTGCTATGTCATGTTGCTATGCC
LOC_Os09g27350
OsAffx.31213.1.S1_x_at--708--6672Chr09:16625236..16625260 (25 bp)
GTTGCTATGCCAACTATTCTTGGAA
LOC_Os09g27350
Target Sequence 
GGAGCTGCACCGTTGTTGAAATTTCTAGAATGCATGAGCTTGCCTTGTTGGTGCTATTAACTCAAGACCCAAGTGATGAT
AAAAGAGATGACTTGCTACCGGCATCCAAAAATCCATTCACCTCCTATATGATGGCACAATATTTTGAGGTTATTGAAAG
CAGGCTTATTAGTGATATAAGCCACTTGGATGGCAACAATGTTCAGGATACTTGGGACTGCAAGGGAATTCTAGTTATAC
TAGAAGATGGTACCAGCAAATGGAGAATGCAAGGGATCAAGCCAAGTGCAAGCAAGAATATAATTTCAGCATGGAAGAAT
GTTTTTATTCCAACCATCAGATCAGTCTTGGAAGGTGACAAGCAATTCTGCATTTACAAGCCAAATATTAGCACTTATTT
GCTATGTCATGTTGCTATGCCAACTATTCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31213.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis