Browse Element(s) Details


OsAffx.31215.1.S1_at

Description tigr:9639.m02712
TID=OsAffx.31215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2999011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed
LOC_Os11g29980OsAffx.19077.1.S1_at11/1111+16922819..16926281NB-ARC domain containing protein
LOC_Os11g29990OsAffx.31215.1.S1_at11/1111+16931533..16935561NB-ARC domain containing protein
LOC_Os11g30000Os.46012.2.S1_x_at7/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.27088.1.A1_x_at4/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.46012.3.S1_x_at3/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.30217.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.54691.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.10222.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30010NANA11+16950641..16952484NB-ARC domain containing protein
LOC_Os11g30020OsAffx.19542.3.S1_x_at4/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30020Os.32727.1.S1_at1/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31215.1.S1_at--437--10151Chr11:16932015..16932039 (25 bp)
TATCTGGAACACATTGGCCGGGAGT
LOC_Os11g29990
OsAffx.31215.1.S1_at--726--6071Chr11:16931994..16932018 (25 bp)
GAGTTTTGCAGCCATGCTCCTGGAA
LOC_Os11g29990
OsAffx.31215.1.S1_at--712--6551Chr11:16931898..16931922 (25 bp)
GATTATGGAGATTTCCCCTTGATGG
LOC_Os11g29990
OsAffx.31215.1.S1_at--306--2471Chr11:16931872..16931896 (25 bp)
AACACTGTCACTCAGAACGGTCTAT
LOC_Os11g29990
OsAffx.31215.1.S1_at--1098--9811Chr11:16931848..16931872 (25 bp)
TAAACTGCGAGCTCTTCCATTGGAT
LOC_Os11g29990
OsAffx.31215.1.S1_at--367--31Chr11:16931830..16931854 (25 bp)
ATTGGATCGATTTCCTTCTTTGGGC
LOC_Os11g29990
OsAffx.31215.1.S1_at--499--10151Chr11:16931779..16931803 (25 bp)
TATCGATACCATTCCTGCAGGTGGA
LOC_Os11g29990
OsAffx.31215.1.S1_at--505--7711Chr11:16931730..16931754 (25 bp)
GGGTGCTATGGCCTATATACTCTCC
LOC_Os11g29990
OsAffx.31215.1.S1_at--229--2911Chr11:16931673..16931697 (25 bp)
AAGGATTGCCCGAGACTGAGTGTAG
LOC_Os11g29990
OsAffx.31215.1.S1_at--1116--6111Chr11:16931656..16931680 (25 bp)
GAGTGTAGTCAGTTCCATGCCTGAA
LOC_Os11g29990
OsAffx.31215.1.S1_at--225--5731Chr11:16931596..16931620 (25 bp)
GACTGCAGTGGGTTTCATGCCTAAA
LOC_Os11g29990
Target Sequence 
TATCTGGAACACATTGGCCGGGAGTTTTGCAGCCATGCTCCTGGAATCAAAGGCTTCCCATCATTAACAAGCTTGGAATT
TTCATATATACCATGGTGGAATGAGTGGACCGGTGTAGATTATGGAGATTTCCCCTTGATGGAAACACTGTCACTCAGAA
CGGTCTATAAACTGCGAGCTCTTCCATTGGATCGATTTCCTTCTTTGGGCACACTGACATTGGATGAATGTGATGGTATC
GATACCATTCCTGCAGGTGGAACCATTAAGAAGCTATGCATTGGAGGGTGCTATGGCCTATATACTCTCCCTACCCAATC
CTCACTCCTAAAGCTGCAGCTAAAGGATTGCCCGAGACTGAGTGTAGTCAGTTCCATGCCTGAACTGGACACATTAGAGA
TATTTAAATGTCCAAAGCTGACTGCAGTGGGTTTCATGCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis