Browse Element(s) Details


OsAffx.31218.1.S1_at

Description tigr:9639.m02723
TID=OsAffx.31218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3011011/11NB-ARC domain containing protein
LOC_Os07g055701/11ERD4 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30060OsAffx.7254.1.S1_at11/1111+16982135..16986830NB-ARC domain containing protein
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30080NANA11+16997649..17000094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.47463.1.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.14491.2.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30100OsAffx.7255.1.S1_at10/1111+17003671..17004348hypothetical protein
LOC_Os11g30110OsAffx.31218.1.S1_at11/1111+17005848..17007142NB-ARC domain containing protein
LOC_Os11g30120OsAffx.19079.1.S1_x_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30120OsAffx.19079.1.S1_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30130OsAffx.19080.1.S1_at11/1111+17013864..17016021hypothetical protein
LOC_Os11g30130Os.55295.1.S1_at1/1111+17013864..17016021hypothetical protein
LOC_Os11g30140NANA11+17017842..17018672retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31218.1.S1_at--828--3051Chr11:17006558..17006582 (25 bp)
AATCTAGCTAGTCCGGTTTCTGTCA
LOC_Os11g30110
OsAffx.31218.1.S1_at--501--4711Chr11:17006620..17006644 (25 bp)
GCTGGCCCAGCTAGTGTATAACCAC
LOC_Os11g30110
OsAffx.31218.1.S1_at--1127--4991Chr11:17006675..17006699 (25 bp)
GCATGGGTTTGCGTATCTGAGCAGT
LOC_Os11g30110
OsAffx.31218.1.S1_at--181--2151Chr11:17006719..17006743 (25 bp)
ACAGAGCATCATTGTCGCGGTTACA
LOC_Os11g30110
OsAffx.31218.1.S1_at--648--1432Chr11:17006764..17006788 (25 bp)
AGAACTTCCTAATCTCCATGAGAGA
LOC_Os11g30110
OsAffx.31218.1.S1_at--1077--7651Chr11:17006862..17006886 (25 bp)
GGGATCTGCTGTGCATGCCTATGAA
LOC_Os11g30110
OsAffx.31218.1.S1_at--1042--9171Chr11:17006877..17006901 (25 bp)
TGCCTATGAACACCACGAAGCTTTG
LOC_Os11g30110
OsAffx.31218.1.S1_at--805--6911Chr11:17006901..17006925 (25 bp)
GTATGATTGTAGTGACCACCCGCAG
LOC_Os11g30110
OsAffx.31218.1.S1_at--833--5152Chr11:17007013..17007037 (25 bp)
GCAAGTTGCTCTCACTGTTAACCAA
LOC_Os11g30110
OsAffx.31218.1.S1_at--842--5511Chr11:17007038..17007062 (25 bp)
GAAAATGCTCCACCAAACCTGGTAG
LOC_Os11g30110
OsAffx.31218.1.S1_at--1111--2831Chr11:17007086..17007110 (25 bp)
AAGTGCAAGGGCTTTGCCTTTAGCG
LOC_Os11g30110
Target Sequence 
AATCTAGCTAGTCCGGTTTCTGTCATGGCAATTGTTGGTATGGAAGGATTAGGCAAGACAACGCTGGCCCAGCTAGTGTA
TAACCACCCAGAAGTGTGCAAGTATTTTGATGTGCACGCATGGGTTTGCGTATCTGAGCAGTTTGATATCAACAACATAA
CACAGAGCATCATTGTCGCGGTTACAAAGGAGAAGTGTGATCTATCAGAACTTCCTAATCTCCATGAGAGACTGGTAGAA
GAAATTAAGCAAAAGAAAGTTTTGCTTGTGTTGGATGATGTGTGGAATGAAAGAAGAGATTGTTGGGATCTGCTGTGCAT
GCCTATGAACACCACGAAGCTTTGTATGATTGTAGTGACCACCCGCAGCGAGAAAGTCGCAAAGCTTGTGCAGACAATGT
CAAACTTCTATAACCTAGAATGCTTGAGTTTTGATGAGAGCTGGTTGTTGTTCAGGCAAGTTGCTCTCACTGTTAACCAA
GAAAATGCTCCACCAAACCTGGTAGAGATTGGAAAGGCTATAGTTAGAAAGTGCAAGGGCTTTGCCTTTAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis