Browse Element(s) Details


Os.55295.1.S1_at

Description gb:AK107819.1
DB_XREF= gi:32993028
TID=Os.55295.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F11, full insert sequence.
FL= gb:AK107819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g301301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30080NANA11+16997649..17000094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.47463.1.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30090Os.14491.2.S1_x_at4/1111+17000342..17002464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30100OsAffx.7255.1.S1_at10/1111+17003671..17004348hypothetical protein
LOC_Os11g30110OsAffx.31218.1.S1_at11/1111+17005848..17007142NB-ARC domain containing protein
LOC_Os11g30120OsAffx.19079.1.S1_x_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30120OsAffx.19079.1.S1_at11/1111+17010857..17011114hypothetical protein
LOC_Os11g30130OsAffx.19080.1.S1_at11/1111+17013864..17016021hypothetical protein
LOC_Os11g30130Os.55295.1.S1_at1/1111+17013864..17016021hypothetical protein
LOC_Os11g30140NANA11+17017842..17018672retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55295.1.S1_at--558--6771Chr04:19860214..19860238 (25 bp)
GTTACGTTACGTGGCCAGTGGCGTA
NONE
Os.55295.1.S1_at--643--5231Chr04:19860308..19860332 (25 bp)
GAATCCAAGCGAGACGGCGACCCAG
NONE
Os.55295.1.S1_at--876--5811Chr04:19860326..19860350 (25 bp)
GACCCAGGCGACGATCGAATCGAGT
NONE
Os.55295.1.S1_at--388--6391Chr04:19860338..19860362 (25 bp)
GATCGAATCGAGTGATCCCGCGGCA
NONE
Os.55295.1.S1_at--551--5351Chr04:19860384..19860408 (25 bp)
GAAGATACGGCACGTCCGGTACGCA
NONE
Os.55295.1.S1_at--266--7651Chr04:19860435..19860459 (25 bp)
GGGAGATTCGCACGCAGCGACTCCT
NONE
Os.55295.1.S1_at--687--6931Chr04:19860478..19860502 (25 bp)
GTAGTGGCTGCGATCACACCGGCGA
NONE
Os.55295.1.S1_at--554--4391Chr04:19860515..19860539 (25 bp)
GCCACGACGACGGAGGCTTCAACGT
NONE
Os.55295.1.S1_at--978--4891Chr04:19860530..19860554 (25 bp)
GCTTCAACGTCTTCGCGTAGATGAT
NONE
Os.55295.1.S1_at--143--1854Chr11:8858835..8858859 (25 bp)
ACGCAGATGATTACAAGAGTTCCAG
NONE
Os.55295.1.S1_at--170--6073Chr11:17015310..17015335 (24 bp)
GAGTTCCAGACATCAAGTTCTTACA
LOC_Os11g30130
Target Sequence 
GTTACGTTACGTGGCCAGTGGCGTACGTCCCGTCCCGCCTCCGCGCGCGTGGTGCGCGGCGCCCGAACTCTCCCGGCCTC
TCGCGCGACGCGAAGAATCCAAGCGAGACGGCGACCCAGGCGACGATCGAATCGAGTGATCCCGCGGCACGCGAGCCTGT
GGAGCGCGCCGAAGATACGGCACGTCCGGTACGCACGCTCGGCGCCCTTCCTTTTTTTGGGGGGAGATTCGCACGCAGCG
ACTCCTGGCCCAGCGTGCGGGTGCGTAGTGGCTGCGATCACACCGGCGACTTCCTACGCGCGCCACGACGACGGAGGCTT
CAACGTCTTCGCGTAGATGATTTTTTTTTTTTGAGAAAGGGAGGGAAACTCCCCCGTTTTCATTAAAGAAAACGCAGATG
ATTACAAGAGTTCCAGACATCAAGTTCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis