Browse Element(s) Details


OsAffx.31227.1.S1_at

Description tigr:9639.m02745
TID=OsAffx.31227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g303508/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein
LOC_Os11g30300OsAffx.19084.1.S1_at4/1111+17096207..17096593hypothetical protein
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30360Os.9072.1.S1_at11/1111+17123166..17123706expressed protein
LOC_Os11g30370OsAffx.19085.1.S1_at11/1111+17128885..17130188expressed protein
LOC_Os11g30370OsAffx.2442.1.S1_x_at1/1111+17128885..17130188expressed protein
LOC_Os11g30380NANA11+17137848..17138267SBP domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31227.1.S1_at--823--831Chr11:17115309..17115333 (25 bp)
ATGGATCCATAGTCTCCATCCTAGA
NONE
OsAffx.31227.1.S1_at--1162--10031Chr11:17115300..17115324 (25 bp)
TAGTCTCCATCCTAGACGTGATCGA
NONE
OsAffx.31227.1.S1_at--554--7171Chr11:17115298..17115322 (25 bp)
GTCTCCATCCTAGACGTGATCGACA
NONE
OsAffx.31227.1.S1_at--364--1551Chr11:17114942..17115287 (25 bp)
AGCATTCTCCATTCGAGGCATCGAG
LOC_Os11g30350
OsAffx.31227.1.S1_at--378--111Chr11:17114939..17115284 (25 bp)
ATTCTCCATTCGAGGCATCGAGGTC
LOC_Os11g30350
OsAffx.31227.1.S1_at--642--6751Chr11:17114839..17114863 (25 bp)
GTTCAGCTGTGGTACTACACTAGTA
LOC_Os11g30350
OsAffx.31227.1.S1_at--378--9811Chr11:17114824..17114848 (25 bp)
TACACTAGTACTCGAACCGTGCCGG
LOC_Os11g30350
OsAffx.31227.1.S1_at--494--5431Chr11:17114811..17114835 (25 bp)
GAACCGTGCCGGTTTTTGTACAGTG
LOC_Os11g30350
OsAffx.31227.1.S1_at--497--9171Chr11:17114805..17114829 (25 bp)
TGCCGGTTTTTGTACAGTGTTTTCA
LOC_Os11g30350
OsAffx.31227.1.S1_at--85--1111Chr11:17114791..17114814 (24 bp)
AGTGTTTTCATTTCTGGCTAGCAGA
LOC_Os11g30350
OsAffx.31227.1.S1_at--931--9451Chr11:17114720..17114802 (25 bp)
TCTGGCTAGCAGAGGTGCAGAGCCT
LOC_Os11g30350
Target Sequence 
ATGGATCCATAGTCTCCATCCTAGACGTGATCGACATCACACATGCAGCATTCTCCATTCGAGGCATCGAGGTCGCAGAT
GATGTCGGACATCCACAACGAGCAGTCGTTCTCGTTCAAGCTCCAGGACAGGCGAGGACGGATGCACCGGTTCAGCTGTG
GTACTACACTAGTACTCGAACCGTGCCGGTTTTTGTACAGTGTTTTCATTTCTGGCTAGCAGAGGTGCAGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis