Browse Element(s) Details


OsAffx.31237.1.S1_at

Description tigr:9639.m02819
TID=OsAffx.31237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to N-hydroxycinnamoylbenzoyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3109011/11transferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified
LOC_Os11g31060OsAffx.19095.1.S1_at11/1111+17567492..17569027BAG domain containing protein, expressed
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31237.1.S1_at--46--1631Chr11:17592190..17592214 (25 bp)
AGCGGACGAAGCTGCTGTTCGCCGT
LOC_Os11g31090
OsAffx.31237.1.S1_at--155--5791Chr11:17592194..17592218 (25 bp)
GACGAAGCTGCTGTTCGCCGTGGAC
LOC_Os11g31090
OsAffx.31237.1.S1_at--682--1851Chr11:17592195..17592219 (25 bp)
ACGAAGCTGCTGTTCGCCGTGGACG
LOC_Os11g31090
OsAffx.31237.1.S1_at--770--8231Chr11:17592261..17592285 (25 bp)
GGCAACGGCATCGTGCTGACGAACG
LOC_Os11g31090
OsAffx.31237.1.S1_at--871--1931Chr11:17592265..17592289 (25 bp)
ACGGCATCGTGCTGACGAACGCGGT
LOC_Os11g31090
OsAffx.31237.1.S1_at--594--8931Chr11:17592277..17592301 (25 bp)
TGACGAACGCGGTGGCGACCGCCGG
LOC_Os11g31090
OsAffx.31237.1.S1_at--163--7831Chr11:17592373..17592397 (25 bp)
GGTACATGCGGTCGGCGGTGGACTA
LOC_Os11g31090
OsAffx.31237.1.S1_at--1145--1831Chr11:17592435..17592459 (25 bp)
ACGCTGCTGATCACGACGTGGTCCA
LOC_Os11g31090
OsAffx.31237.1.S1_at--853--9111Chr11:17592439..17592463 (25 bp)
TGCTGATCACGACGTGGTCCAGGCT
LOC_Os11g31090
OsAffx.31237.1.S1_at--953--8831Chr11:17592442..17592466 (25 bp)
TGATCACGACGTGGTCCAGGCTCGC
LOC_Os11g31090
OsAffx.31237.1.S1_at--125--9691Chr11:17592445..17592469 (25 bp)
TCACGACGTGGTCCAGGCTCGCCTT
LOC_Os11g31090
Target Sequence 
AGCGGACGAAGCTGCTGTTCGCCGTGGACGGGCGGCGCCGCTTCGAGCCGCCGCTCCCCCGCGGCTACTTCGGCAACGGC
ATCGTGCTGACGAACGCGGTGGCGACCGCCGGCGAGCTGCTGTCGTCGCCGCCGTCGCGCGCGGCGGGGCTGGTGCAGGC
GGCGGTGCGGATGGTGACCGACGGGTACATGCGGTCGGCGGTGGACTACTTCGAGGCGACGCGGGCGCGGCCGTCGCTGG
CGTCGACGCTGCTGATCACGACGTGGTCCAGGCTCGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis