Browse Element(s) Details


OsAffx.31245.1.S1_at

Description tigr:9639.m02858
TID=OsAffx.31245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g314809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein
LOC_Os11g31450Os.53055.1.S1_at11/1111+17870111..17876131expressed protein
LOC_Os11g31450OsAffx.13914.1.S1_at1/1111+17870111..17876131expressed protein
LOC_Os11g31460NANA11+17877455..17878644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31470Os.10185.1.S1_at11/1111+17879333..17887731expressed protein
LOC_Os11g31470Os.57435.1.S1_x_at2/1111+17879333..17887731expressed protein
LOC_Os11g31480Os.20871.1.S1_s_at11/1111+17888761..17896784expressed protein
LOC_Os11g31480OsAffx.31245.1.S1_at9/1111+17888761..17896784expressed protein
LOC_Os11g31490NANA11+17897682..17900108retrotransposon protein, putative, unclassified
LOC_Os11g31500OsAffx.31246.1.S1_at11/1111+17907015..17913821hypothetical protein
LOC_Os11g31510OsAffx.11235.1.S1_at2/1111+17914325..17915554transposon protein, putative, Pong sub-class
LOC_Os11g31520NANA11+17916308..17917784transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31245.1.S1_at--6--8451Chr11:17889590..17889614 (25 bp)
GGCCAGCCGAATGCTCAGGTGGGAG
LOC_Os11g31480
OsAffx.31245.1.S1_at--899--4351Chr11:17889588..17889612 (25 bp)
CCAGCCGAATGCTCAGGTGGGAGAG
LOC_Os11g31480
OsAffx.31245.1.S1_at--150--9631Chr11:17889576..17889600 (25 bp)
TCAGGTGGGAGAGGGATAACTTTAA
LOC_Os11g31480
OsAffx.31245.1.S1_at--68--1071Chr11:17889565..17889589 (25 bp)
AGGGATAACTTTAAGTTGTACATGC
LOC_Os11g31480
OsAffx.31245.1.S1_at--124--9791Chr11:17889554..17889578 (25 bp)
TAAGTTGTACATGCAGAGAAGCCAT
LOC_Os11g31480
OsAffx.31245.1.S1_at--1154--6631Chr11:17889551..17889575 (25 bp)
GTTGTACATGCAGAGAAGCCATGAT
LOC_Os11g31480
OsAffx.31245.1.S1_at--15--10811Chr11:17889550..17889574 (25 bp)
TTGTACATGCAGAGAAGCCATGATG
LOC_Os11g31480
OsAffx.31245.1.S1_at--706--5411Chr11:17889537..17889561 (25 bp)
GAAGCCATGATGCAGCTGGTTACAA
LOC_Os11g31480
OsAffx.31245.1.S1_at--1005--2651Chr11:17889536..17889560 (25 bp)
AAGCCATGATGCAGCTGGTTACAAA
LOC_Os11g31480
OsAffx.31245.1.S1_at--216--7331NONE
GTGCTTGGCATCTGGAGGACCTCCT
NONE
OsAffx.31245.1.S1_at--1098--9051NONE
TGCTTGGCATCTGGAGGACCTCCTG
NONE
Target Sequence 
GGCCAGCCGAATGCTCAGGTGGGAGAGGGATAACTTTAAGTTGTACATGCAGAGAAGCCATGATGCAGCTGGTTACAAAG
AGAAGATCGAGTTTGCGACATACTTCTCAGAAGAGATATCTGGAGGATTGCTCTTTGAGATGGCAGATCAGATACCTTCA
CTTGCCGAGCTCGTAAAAGTTGGCAGCTTACTGGACTTCCAGGATGCTGCTGTTGATTTCCTGCTCAAGTCAAAGAATTT
GCAGCTGTTCCCTGAAGATGAGGCTTTCCTGAAGGCTTCTCTGCAAGATGGTGATGAGGACTGTTAGAGGTATTCAGATC
ATTCTTCTTCGCTTGTTGGTGTGGTTGCTAAACCGGTTGAAGATGGCAAGTAAGATGATGGTGCTTGGCATCTGGAGGAC
CTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis