Browse Element(s) Details


OsAffx.31291.1.S1_at

Description tigr:9639.m03086
TID=OsAffx.31291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3428011/11hypothetical protein
LOC_Os04g193201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified
LOC_Os11g34250NANA11+19556012..19557313retrotransposon protein, putative, unclassified
LOC_Os11g34260NANA11+19558578..19559096retrotransposon protein, putative, unclassified
LOC_Os11g34270Os.11385.1.S1_a_at11/1111+19569696..19573124Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g34280OsAffx.31291.1.S1_at11/1111+19575670..19576290hypothetical protein
LOC_Os11g34290Os.15833.1.S1_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.22699.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.20631.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.18275.1.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.49936.2.A1_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.33601.3.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31291.1.S1_at--142--6111Chr11:19575700..19575724 (25 bp)
GAGTCCTTTGTCAACGCTGTTGCCG
LOC_Os11g34280
OsAffx.31291.1.S1_at--970--7971Chr11:19575912..19575936 (25 bp)
GGATGCCGCTCCTGCGTCTGTCGCA
LOC_Os11g34280
OsAffx.31291.1.S1_at--954--2491Chr11:19575994..19576018 (25 bp)
AACATTCCCGGCGTACCACAAGGCG
LOC_Os11g34280
OsAffx.31291.1.S1_at--403--3231Chr11:19576096..19576120 (25 bp)
CAAGCCGTCGTTGTTCTGAACGTGA
LOC_Os11g34280
OsAffx.31291.1.S1_at--447--10791Chr11:19576106..19576130 (25 bp)
TTGTTCTGAACGTGAAGGCGCTGGT
LOC_Os11g34280
OsAffx.31291.1.S1_at--539--8611Chr11:19576127..19576151 (25 bp)
TGGTGCTCGTGACCCTGGACATCGC
LOC_Os11g34280
OsAffx.31291.1.S1_at--237--3931Chr11:19576155..19576179 (25 bp)
CGGCAACTACGCTCGATGGCGTGGT
LOC_Os11g34280
OsAffx.31291.1.S1_at--1102--851Chr11:19576170..19576194 (25 bp)
ATGGCGTGGTCTCTTTCTCGTGGTT
LOC_Os11g34280
OsAffx.31291.1.S1_at--505--10572Chr11:19576184..19576208 (25 bp)
TTCTCGTGGTTCTCGGCAAATATGC
LOC_Os11g34280
OsAffx.31291.1.S1_at--699--8233Chr12:8739891..8739915 (25 bp)
GGCAAATATGCCTTGACGGACCACG
NONE
OsAffx.31291.1.S1_at--442--10751Chr11:19576210..19576234 (25 bp)
TTGACGGACCACGTTCTCTGCGATG
LOC_Os11g34280
Target Sequence 
GAGTCCTTTGTCAACGCTGTTGCCGCGTCCGTCGCCGACGCCGTCCGCGCGGCCTACCAAGCCCCGCCCGGCTCGATGCA
TCTGCCGGCGCTCTCCACGGTGCCCGCCGCCACCTCACCTCCACCTGCCGGGGATGCCGCTCCTGCGTCTGTCGCACCGA
CCCCGCCGGCGCTCTCACCCGAGCTGGCGGCGCTCTTCGCCCGGCTCGCCCACAACATTCCCGGCGTACCACAAGGCGCC
GCACCGGCTGCGTCCTCCAACGACGCGCCGCCGGCTCCTGTCCTCGACGACAACGCGCGTTCCGCGCTCCGCTCCCAAGC
CGTCGTTGTTCTGAACGTGAAGGCGCTGGTGCTCGTGACCCTGGACATCGCCGCCGGCAACTACGCTCGATGGCGTGGTC
TCTTTCTCGTGGTTCTCGGCAAATATGCCTTGACGGACCACGTTCTCTGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis