Browse Element(s) Details


OsAffx.31316.1.S1_at

Description tigr:9639.m03229
TID=OsAffx.31316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3585011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed
LOC_Os11g35860OsAffx.19181.1.S1_at11/1111+20545167..20547167Protein kinase domain containing protein
LOC_Os11g35870Os.10476.1.S1_at11/1111+20549679..20554880RWD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31316.1.S1_at--923--9851Chr11:20541129..20541153 (25 bp)
TACAACATTTTCGAAGGCCACGTTT
LOC_Os11g35850
OsAffx.31316.1.S1_at--226--4371Chr11:20541146..20541170 (25 bp)
CCACGTTTTTGGAGATGTCGCAGAA
LOC_Os11g35850
OsAffx.31316.1.S1_at--973--3151Chr11:20541174..20541198 (25 bp)
AATTGCTGGAGGCTTGCCAACAAAT
LOC_Os11g35850
OsAffx.31316.1.S1_at--49--8111Chr11:20541231..20541255 (25 bp)
GGACTGCAACCACATAGCTGATCGA
LOC_Os11g35850
OsAffx.31316.1.S1_at--531--1611Chr11:20541246..20541270 (25 bp)
AGCTGATCGAATTCCTCGGATGCCG
LOC_Os11g35850
OsAffx.31316.1.S1_at--379--6351Chr11:20541264..20541288 (25 bp)
GATGCCGAGAAACCTTATGCTACTA
LOC_Os11g35850
OsAffx.31316.1.S1_at--315--9651Chr11:20541308..20541332 (25 bp)
TCAGTGGTGATGTTCCACAGTCTAT
LOC_Os11g35850
OsAffx.31316.1.S1_at--1041--2291Chr11:20541351..20541375 (25 bp)
AAATGGCCTTGACTTGTCCAATAAT
LOC_Os11g35850
OsAffx.31316.1.S1_at--372--7271Chr11:20541366..20541390 (25 bp)
GTCCAATAATCTACTCGAGGGCGAG
LOC_Os11g35850
OsAffx.31316.1.S1_at--1074--6051Chr11:20541388..20541412 (25 bp)
GAGTTCCCTCAATGTTCTCTAATGA
LOC_Os11g35850
OsAffx.31316.1.S1_at--849--4411Chr11:20541652..20541676 (25 bp)
GCCAGCAATGGTTTATCAGGTCCCC
LOC_Os11g35850
Target Sequence 
TACAACATTTTCGAAGGCCACGTTTTTGGAGATGTCGCAGAATCAAATTGCTGGAGGCTTGCCAACAAATATGGAAAACA
TGTCATTGGAAAAATTATATTTGGACTGCAACCACATAGCTGATCGAATTCCTCGGATGCCGAGAAACCTTATGCTACTA
GATATATCATATAACCTTATCAGTGGTGATGTTCCACAGTCTATTTGTGAATTGCAGAAATTAAATGGCCTTGACTTGTC
CAATAATCTACTCGAGGGCGAGTTCCCTCAATGTTCTCTAATGAGCAGGGGTTGGACAAAGTTAAGTTTCCTTGATCTGT
CATGGAATAAATTCTCTGGGACTTTGCCTACATGGATTGGAAACTTTAACAAGCTAGAATTTCTGCAGCTTAAGCACAAT
ATGTTCTCTGGAAGTATTCCTGACAGCATCACCAACCTTGGAAAGCTTTCTCATTTGGATCTAGCCAGCAATGGTTTATC
AGGTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis