Browse Element(s) Details


OsAffx.19181.1.S1_at

Description tigr:9639.m03230
TID=OsAffx.19181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3586011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed
LOC_Os11g35860OsAffx.19181.1.S1_at11/1111+20545167..20547167Protein kinase domain containing protein
LOC_Os11g35870Os.10476.1.S1_at11/1111+20549679..20554880RWD domain containing protein, expressed
LOC_Os11g35880OsAffx.22940.5.S1_at11/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.1.S1_s_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.5.S1_x_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.2.S1_s_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880Os.35344.3.S1_x_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.3.S1_x_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.2.S1_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880Os.35344.18.S1_x_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.31552.2.S1_at1/1111+20569552..20576918transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19181.1.S1_at--623--7671Chr11:20545682..20545706 (25 bp)
GGGATTCTATCAGACCTACATGTGG
LOC_Os11g35860
OsAffx.19181.1.S1_at--378--6511Chr11:20545647..20545671 (25 bp)
GATATCAAATATAGTGGTCCCGAAA
LOC_Os11g35860
OsAffx.19181.1.S1_at--726--2011Chr11:20545557..20545581 (25 bp)
ACTAATTGGCTGTTGTCTAGAGACT
LOC_Os11g35860
OsAffx.19181.1.S1_at--834--2951Chr11:20545499..20545523 (25 bp)
AATGGAACCCTGTATCACCATCTTC
LOC_Os11g35860
OsAffx.19181.1.S1_at--176--7391Chr11:20545471..20545495 (25 bp)
GTGAGGGTCCAAGGTCGCTATCATG
LOC_Os11g35860
OsAffx.19181.1.S1_at--996--3091Chr11:20545442..20545466 (25 bp)
AATAGGTTGAGGATCGCAGCCGAAA
LOC_Os11g35860
OsAffx.19181.1.S1_at--211--71Chr11:20545418..20545442 (25 bp)
ATTGCAAATGCTCTTTCCTATCTTC
LOC_Os11g35860
OsAffx.19181.1.S1_at--925--3051Chr11:20545328..20545352 (25 bp)
AATCTGACATCAAAGGTATCGGACT
LOC_Os11g35860
OsAffx.19181.1.S1_at--693--4891Chr11:20545298..20545322 (25 bp)
GCTTCAAGGTATATCCCAATCGAGA
LOC_Os11g35860
OsAffx.19181.1.S1_at--966--7951Chr11:20545230..20545254 (25 bp)
GGATCCTATGTACTTTTACACGGGT
LOC_Os11g35860
OsAffx.19181.1.S1_at--130--9871Chr11:20545214..20545238 (25 bp)
TACACGGGTCGTCTCAATGATAAAA
LOC_Os11g35860
Target Sequence 
GGGATTCTATCAGACCTACATGTGGTAGCCATCAAGATATCAAATATAGTGGTCCCGAAAGAAATAGATGATTTCATAAA
TGAGGTTGCCATCCTCTCACAAATCAACCATAAAAATGTAGTAAAACTAATTGGCTGTTGTCTAGAGACTGAAGTTCCAT
TGTTAGTTTATGAATTTATTTCCAATGGAACCCTGTATCACCATCTTCATGGTGAGGGTCCAAGGTCGCTATCATGGAGC
AATAGGTTGAGGATCGCAGCCGAAATTGCAAATGCTCTTTCCTATCTTCACTCATCAGTTACAATCCCAATAATCCATAG
AGATATAAAGTCCAGTAACATACTTCTTGATGATAATCTGACATCAAAGGTATCGGACTTTGGAGCTTCAAGGTATATCC
CAATCGAGAAAACAGCACTAACAACAGCAGTTCAAGGTACTGTAGGATATTTGGATCCTATGTACTTTTACACGGGTCGT
CTCAATGATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis