Browse Element(s) Details


Os.10476.1.S1_at

Description gb:AK065292.1
DB_XREF= gi:32975310
TID=Os.10476.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N04, full insert sequence.
FL= gb:AK065292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3587011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed
LOC_Os11g35860OsAffx.19181.1.S1_at11/1111+20545167..20547167Protein kinase domain containing protein
LOC_Os11g35870Os.10476.1.S1_at11/1111+20549679..20554880RWD domain containing protein, expressed
LOC_Os11g35880OsAffx.22940.5.S1_at11/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.1.S1_s_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.5.S1_x_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.2.S1_s_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880Os.35344.3.S1_x_at10/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.3.S1_x_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.22940.2.S1_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880Os.35344.18.S1_x_at8/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35880OsAffx.31552.2.S1_at1/1111+20569552..20576918transposon protein, putative, Mutator sub-class
LOC_Os11g35890NANA11+20578068..20581025Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10476.1.S1_at--231--5131Chr11:20550121..20550145 (25 bp)
GCACAACAGCAGTTCAGGTCATCGA
LOC_Os11g35870
Os.10476.1.S1_at--888--5651Chr11:20550092..20550116 (25 bp)
GACATCGATCTCATGCTTCAAGAAG
LOC_Os11g35870
Os.10476.1.S1_at--960--5171Chr11:20550055..20550079 (25 bp)
GCAAGGGCAACCTGCTAGGCAACAA
LOC_Os11g35870
Os.10476.1.S1_at--1121--5571Chr11:20550022..20550046 (25 bp)
GAAAGGCGGAGACACTTCACACCAA
LOC_Os11g35870
Os.10476.1.S1_at--279--351Chr11:20549958..20549982 (25 bp)
ATAATCGCAAGCCTGGTACCAATTC
LOC_Os11g35870
Os.10476.1.S1_at--474--8771Chr11:20549931..20549955 (25 bp)
TGTTTCATGCCTCACTATCAGACGG
LOC_Os11g35870
Os.10476.1.S1_at--969--391Chr11:20549915..20549939 (25 bp)
ATCAGACGGCTCATAACATGGCAGA
LOC_Os11g35870
Os.10476.1.S1_at--335--10491Chr11:20549848..20549872 (25 bp)
TTAAACTCGGTTCATGTCACTGCTG
LOC_Os11g35870
Os.10476.1.S1_at--628--8951Chr11:20549785..20549809 (25 bp)
TGACTTTGCATATCACTGTTGTGAC
LOC_Os11g35870
Os.10476.1.S1_at--447--6011Chr11:20549756..20549780 (25 bp)
GAGAGATCTGGCTAGCACGTACTTA
LOC_Os11g35870
Os.10476.1.S1_at--33--5111Chr11:20549742..20549766 (25 bp)
GCACGTACTTATGTTCAGCCAAATT
LOC_Os11g35870
Target Sequence 
GCACAACAGCAGTTCAGGTCATCGAAGGAGACATCGATCTCATGCTTCAAGAAGACAACCACATGGGCAAGGGCAACCTG
CTAGGCAACAATGGCAGAGGAAAGGCGGAGACACTTCACACCAATAGCAGGAAAGGTTGTGGGAGGTTTGTTTTTTGTCG
GTTATAATCGCAAGCCTGGTACCAATTCTANTGTTTCATGCCTCACTATCAGACGGCTCATAACATGGCAGAATTATCCA
ATGCTGTTGTTATGACTAAGAGTATATTATAGTTTTAAACTCGGTTCATGTCACTGCTGCGAAACTGAAGCTACTAGCCA
CTGTATACACATCAATTTGACTTTGCATATCACTGTTGTGACTCGTGAGAGATCTGGCTAGCACGTACTTATGTTCAGCC
AAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis