Browse Element(s) Details


OsAffx.31315.1.S1_at

Description tigr:9639.m03225
TID=OsAffx.31315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Cf2Cf5 disease resistance protein homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3581011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35756Os.46306.1.S1_x_at2/1111+20487880..20490973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_x_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35770NANA11+20498078..20499362retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31315.1.S1_at--887--4771Chr11:20517341..20517365 (25 bp)
GCTGCGGTTTCTACGACTGAACAAC
LOC_Os11g35810
OsAffx.31315.1.S1_at--65--811Chr11:20517376..20517400 (25 bp)
ATGGGCATATTCCAGGCTCTATCAC
LOC_Os11g35810
OsAffx.31315.1.S1_at--758--1271Chr11:20517410..20517434 (25 bp)
AGATCTTCGCCATTTGAATCTTGCG
LOC_Os11g35810
OsAffx.31315.1.S1_at--425--8091Chr11:20517870..20517894 (25 bp)
GGACCAATACCATCAGGCGGGCAAC
LOC_Os11g35810
OsAffx.31315.1.S1_at--854--4651Chr11:20517886..20517910 (25 bp)
GCGGGCAACTTGAAACACTGTACAC
LOC_Os11g35810
OsAffx.31315.1.S1_at--75--9551Chr11:20517959..20517983 (25 bp)
TCTTCAAAGGAGTTGCCCCGGCAAT
LOC_Os11g35810
OsAffx.31315.1.S1_at--121--6311Chr11:20518053..20518077 (25 bp)
GATGACCAAATGTTCTTCCTCTTTG
LOC_Os11g35810
OsAffx.31315.1.S1_at--307--6731Chr11:20518115..20518139 (25 bp)
GTTCTTTTCTCTGCTGTTCGTGAAA
LOC_Os11g35810
OsAffx.31315.1.S1_at--431--9331Chr11:20518160..20518184 (25 bp)
TCGCCTCTTCGACAGTGTTTATGAC
LOC_Os11g35810
OsAffx.31315.1.S1_at--236--2071Chr11:20518552..20518576 (25 bp)
ACTTGGAAGAACTCTGCCTTTCGTC
LOC_Os11g35810
OsAffx.31315.1.S1_at--48--4451Chr11:20518567..20518591 (25 bp)
GCCTTTCGTCGAGCAGAGTAGCAAA
LOC_Os11g35810
Target Sequence 
GCTGCGGTTTCTACGACTGAACAACAACATGTTCCATGGGCATATTCCAGGCTCTATCACTGGACTAAGAGATCTTCGCC
ATTTGAATCTTGCGGAAAATCGGTTATCTGGACCAATACCATCAGGCGGGCAACTTGAAACACTGTACACGTATAACCCA
TTGATGTATAGTGGTAACAATGGTCTTTGTGGGTTTCCTCTTCAAAGGAGTTGCCCCGGCAATAGCACATCAAAGGATGG
TGATCTTTCTAATGAAAAGCATGGGGATCAGCAGATACCTGAACTACATTCTGATGACCAAATGTTCTTCCTCTTTGGCT
GTGGCGTTGGTTTCGTGGTTGGTTCCTGGGTTGTGTTCTTTTCTCTGCTGTTCGTGAAAACTTGGAGGATTGCTTATTTT
CGCCTCTTCGACAGTGTTTATGACAAAATAGTCGCATACAATGCCATTTTTCAACTCATTTGGAACTTGGAAGAACTCTG
CCTTTCGTCGAGCAGAGTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis