Browse Element(s) Details


OsAffx.31314.1.S1_at

Description tigr:9639.m03223
TID=OsAffx.31314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3579010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35740OsAffx.8275.1.S1_at6/1111+20478504..20483033retrotransposon protein, putative, unclassified
LOC_Os11g35750OsAffx.31313.1.S1_at11/1111+20483670..20486910hypothetical protein
LOC_Os11g35756Os.46306.1.S1_x_at2/1111+20487880..20490973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_x_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35770NANA11+20498078..20499362retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31314.1.S1_at--377--6191NONE
GAGGAAGAGACCTGCACCGGCAGCT
NONE
OsAffx.31314.1.S1_at--467--4011Chr11:20508885..20508909 (25 bp)
CGTCGCCGATGCACTACATGAGCAT
LOC_Os11g35790
OsAffx.31314.1.S1_at--1126--9871Chr11:20508899..20508923 (25 bp)
TACATGAGCATCATCATGGGCGGCC
LOC_Os11g35790
OsAffx.31314.1.S1_at--161--791Chr11:20508914..20508938 (25 bp)
ATGGGCGGCCAAATATTGCCGGCGC
LOC_Os11g35790
OsAffx.31314.1.S1_at--917--7531Chr11:20509020..20509044 (25 bp)
GTGGCGTACCGGAGAAGACTGCTTC
LOC_Os11g35790
OsAffx.31314.1.S1_at--502--9072Chr11:20509039..20509063 (25 bp)
TGCTTCCGCCATTGGAGAGGTGTCA
LOC_Os11g35790
OsAffx.31314.1.S1_at--1060--6191Chr11:20509123..20509147 (25 bp)
GAGGCAGCTATGTCCGGCAAGGTTA
LOC_Os11g35790
OsAffx.31314.1.S1_at--143--2911Chr11:20509141..20509165 (25 bp)
AAGGTTAGTAGCTCCTTGCTCTCCT
LOC_Os11g35790
OsAffx.31314.1.S1_at--954--9091Chr11:20509157..20509181 (25 bp)
TGCTCTCCTTGCAGCATCTGAGGCA
LOC_Os11g35790
OsAffx.31314.1.S1_at--29--491Chr11:20509172..20509196 (25 bp)
ATCTGAGGCACCATGATCTTAGCAT
LOC_Os11g35790
OsAffx.31314.1.S1_at--650--2691Chr11:20509208..20509232 (25 bp)
AAGCTCTCCCGAGATTTCTCAGGAT
LOC_Os11g35790
Target Sequence 
GAGGAAGAGACCTGCACCGGCAGCTTATTCCTCGTCGCCGATGCACTACATGAGCATCATCATGGGCGGCCAAATATTGC
CGGCGCGACCTGCGTGCCGCACGAGAGGGACGCGCTGCTGGCCTTCAAGGAAGGTGTCGTCGGCGACCCCGTGGGCCGCC
TCGCTTCGTGGCGTACCGGAGAAGACTGCTTCCGCCATTGGAGAGGTGTCAGGTGCAGCAACCTCACCGGCCATGTCCTT
AAGCTCCACCTCCGCAACACGGATGGTGGAGAGGCAGCTATGTCCGGCAAGGTTAGTAGCTCCTTGCTCTCCTTGCAGCA
TCTGAGGCACCATGATCTTAGCATGAACAACCTCCAAGCTCTCCCGAGATTTCTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis