Browse Element(s) Details


OsAffx.31313.1.S1_at

Description tigr:9639.m03219
TID=OsAffx.31313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35720OsAffx.19178.1.S1_at11/1111+20459447..20460919hypothetical protein
LOC_Os11g35730Os.46012.2.S1_x_at9/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_x_at6/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.27088.1.A1_x_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.54691.1.S1_x_at1/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35740OsAffx.8275.1.S1_at6/1111+20478504..20483033retrotransposon protein, putative, unclassified
LOC_Os11g35750OsAffx.31313.1.S1_at11/1111+20483670..20486910hypothetical protein
LOC_Os11g35756Os.46306.1.S1_x_at2/1111+20487880..20490973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_x_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35770NANA11+20498078..20499362retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31313.1.S1_at--294--1491Chr11:20483746..20483770 (25 bp)
AGCAACATCAATCACAGCGGCATAT
LOC_Os11g35750
OsAffx.31313.1.S1_at--182--1631Chr11:20483761..20483785 (25 bp)
AGCGGCATATTATGGCAGCGTTCCA
LOC_Os11g35750
OsAffx.31313.1.S1_at--829--1631Chr11:20483777..20483801 (25 bp)
AGCGTTCCAGTCTCAGTCGAATCAA
LOC_Os11g35750
OsAffx.31313.1.S1_at--469--1651Chr11:20483830..20483854 (25 bp)
AGCCTTCAGTGCAACAAAGCTTTCA
LOC_Os11g35750
OsAffx.31313.1.S1_at--728--2351Chr11:20483845..20483869 (25 bp)
AAAGCTTTCAAACTTCAGCCGGGAT
LOC_Os11g35750
OsAffx.31313.1.S1_at--282--9671Chr11:20483859..20483883 (25 bp)
TCAGCCGGGATGTTCTTGCAACAAA
LOC_Os11g35750
OsAffx.31313.1.S1_at--779--5111Chr11:20483916..20483940 (25 bp)
GCACAGTGCGGCCTTCAAGAAGTTC
LOC_Os11g35750
OsAffx.31313.1.S1_at--652--8091Chr11:20486601..20486625 (25 bp)
GGACCAGCACTTTACAGAACTCTAT
LOC_Os11g35750
OsAffx.31313.1.S1_at--1069--4391Chr11:20486669..20486693 (25 bp)
GCCAAATGCCATCTCAAATGCCTAT
LOC_Os11g35750
OsAffx.31313.1.S1_at--898--4951Chr11:20486738..20486762 (25 bp)
GCATACTGCGGTTCCTGCAAATTTA
LOC_Os11g35750
OsAffx.31313.1.S1_at--9--10491Chr11:20486760..20486784 (25 bp)
TTACAAGGGCGACATTCTGCCTGCT
LOC_Os11g35750
Target Sequence 
AGCAACATCAATCACAGCGGCATATTATGGCAGCGTTCCAGTCTCAGTCGAATCAACTGCAGCAAGAATTGGGGATGGAA
CAGAAGCCTTCAGTGCAACAAAGCTTTCAAACTTCAGCCGGGATGTTCTTGCAACAAAATAACATTGATGAACAAATGCA
ATATACTCAGGCACAGTGCGGCCTTCAAGAAGTTCCATTCAGTACAACTATGCACATTACTACTCAAACTGATCATCCAG
GTCAATGTTATTTGCAAGATGAGATATATGACATGGTGAGGAACTTGAAGGACCAGCACTTTACAGAACTCTATCATCTG
TACAATAAGATATCTAGGAAGCAAGAATATGTGGATAGCCAAATGCCATCTCAAATGCCTATAGAACAGTATGGAAAGAT
GAAGAAATTTAAAGAAATGTTGGAGCGCATACTGCGGTTCCTGCAAATTTACAAGGGCGACATTCTGCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis