Browse Element(s) Details


OsAffx.19178.1.S1_at

Description tigr:9639.m03216
TID=OsAffx.19178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3572011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35700OsAffx.22722.1.S1_at3/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.22722.1.S1_x_at2/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.1646.1.S1_x_at1/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35710Os.27061.2.A1_x_at11/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35710OsAffx.27960.1.A1_at2/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35720OsAffx.19178.1.S1_at11/1111+20459447..20460919hypothetical protein
LOC_Os11g35730Os.46012.2.S1_x_at9/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_x_at6/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.27088.1.A1_x_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.54691.1.S1_x_at1/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35740OsAffx.8275.1.S1_at6/1111+20478504..20483033retrotransposon protein, putative, unclassified
LOC_Os11g35750OsAffx.31313.1.S1_at11/1111+20483670..20486910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19178.1.S1_at--603--4211Chr11:20459602..20459626 (25 bp)
CCGCCTACTGCCACGTGAGAGAGGA
LOC_Os11g35720
OsAffx.19178.1.S1_at--1040--4451Chr11:20459604..20459628 (25 bp)
GCCTACTGCCACGTGAGAGAGGAGA
LOC_Os11g35720
OsAffx.19178.1.S1_at--1--1991Chr11:20459608..20459632 (25 bp)
ACTGCCACGTGAGAGAGGAGAGACA
LOC_Os11g35720
OsAffx.19178.1.S1_at--850--55913Chr11:20459690..20459714 (25 bp)
GAAATTTTTGAAGTGTTGAGAGGGT
LOC_Os11g35720
OsAffx.19178.1.S1_at--291--8871Chr11:20460178..20460567 (25 bp)
TGAGAGGGTGGCGTACCCGTCAACA
LOC_Os11g35720
OsAffx.19178.1.S1_at--1002--1051Chr11:20460549..20460569 (21 bp)
AGAGGGTGGCGTACCCGTCAACAGC
LOC_Os11g35720
OsAffx.19178.1.S1_at--594--5992Chr11:20460570..20460594 (25 bp)
GAGACGCCTGTGGTGACATCGTCAT
LOC_Os11g35720
OsAffx.19178.1.S1_at--77--1831Chr11:20460573..20460597 (25 bp)
ACGCCTGTGGTGACATCGTCATTCT
LOC_Os11g35720
OsAffx.19178.1.S1_at--635--3891Chr11:20460577..20460601 (25 bp)
CTGTGGTGACATCGTCATTCTCAAA
LOC_Os11g35720
OsAffx.19178.1.S1_at--440--7491Chr11:20460579..20460603 (25 bp)
GTGGTGACATCGTCATTCTCAAAAT
LOC_Os11g35720
OsAffx.19178.1.S1_at--467--7771Chr11:20460581..20460605 (25 bp)
GGTGACATCGTCATTCTCAAAATGT
LOC_Os11g35720
Target Sequence 
CCGCCTACTGCCACGTGAGAGAGGAGAGACAGTTGGAGGTGAGGATAAGGATAAGGAGGTGAGAGAGGTTGAGGGAGGAT
ATGAGGATGAAATTTTTGAAGTGTTGAGAGGGTGGCGTACCCGTCAACAGCGAGACGCCTGTGGTGACATCGTCATTCTC
AAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis