Browse Element(s) Details


OsAffx.27960.1.A1_at

Description tigr:9634.m03449
TID=OsAffx.27960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g357102/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35690OsAffx.20628.2.S1_x_at4/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.2.S1_at3/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.10496.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.1647.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.1.S1_at1/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35700OsAffx.22722.1.S1_at3/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.22722.1.S1_x_at2/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.1646.1.S1_x_at1/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35710Os.27061.2.A1_x_at11/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35710OsAffx.27960.1.A1_at2/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35720OsAffx.19178.1.S1_at11/1111+20459447..20460919hypothetical protein
LOC_Os11g35730Os.46012.2.S1_x_at9/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_x_at6/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.27088.1.A1_x_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.54691.1.S1_x_at1/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35740OsAffx.8275.1.S1_at6/1111+20478504..20483033retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27960.1.A1_at--214--3931Chr06:21326372..21326396 (25 bp)
CGGCATAGGACGACACACAGAGCTT
NONE
OsAffx.27960.1.A1_at--1116--4931Chr06:21326370..21326394 (25 bp)
GCATAGGACGACACACAGAGCTTCG
NONE
OsAffx.27960.1.A1_at--219--973Chr11:20448202..20448221 (20 bp)
AGGACGACACACAGAGCTTCGTGAT
LOC_Os11g35710
OsAffx.27960.1.A1_at--211--4112Chr11:20448202..20448225 (24 bp)
CGACACACAGAGCTTCGTGATGCGC
LOC_Os11g35710
OsAffx.27960.1.A1_at--307--10611Chr06:21326349..21326373 (25 bp)
TTCGTGATGCGCGTGCCGTCGAGCA
NONE
OsAffx.27960.1.A1_at--324--611Chr06:21326343..21326367 (25 bp)
ATGCGCGTGCCGTCGAGCACCATTT
NONE
OsAffx.27960.1.A1_at--529--7291Chr06:21326337..21326361 (25 bp)
GTGCCGTCGAGCACCATTTCGCGGC
NONE
OsAffx.27960.1.A1_at--597--4072Chr12:5423751..5423775 (25 bp)
CGAGCACCATTTCGCGGCCGGCGGT
NONE
OsAffx.27960.1.A1_at--611--4671Chr06:21326310..21326334 (25 bp)
GCGGTGAGCACGTTCAGACGTTCCC
NONE
OsAffx.27960.1.A1_at--300--7391Chr06:21326307..21326331 (25 bp)
GTGAGCACGTTCAGACGTTCCCACC
NONE
OsAffx.27960.1.A1_at--829--1891Chr06:21326278..21326303 (25 bp)
ACGTCGAGCACCATTCGCGGCCGCT
NONE
Target Sequence 
CGGCATAGGACGACACACAGAGCTTCGTGATGCGCGTGCCGTCGAGCACCATTTCGCGGCCGGCGGTGAGCACGTTCAGA
CGTTCCCACCTCCACGTCGAGCACCATTCGCGGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27960.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis