Browse Element(s) Details


OsAffx.31336.1.S1_at

Description tigr:9639.m03339
TID=OsAffx.31336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3694011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36900OsAffx.31335.1.S1_at11/1111+21264128..21264409hypothetical protein
LOC_Os11g36910OsAffx.19203.1.S1_at11/1111+21267182..21267544hypothetical protein
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36950OsAffx.31337.1.S1_at10/1111+21295469..21297132T-complex protein 1, theta subunit, putative
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31336.1.S1_at--414--4571Chr11:21289708..21289732 (25 bp)
GCGCGCATCGAGGTGTACCTGTTCG
LOC_Os11g36940
OsAffx.31336.1.S1_at--1161--4111Chr11:21289711..21289735 (25 bp)
CGCATCGAGGTGTACCTGTTCGGGC
LOC_Os11g36940
OsAffx.31336.1.S1_at--193--7531Chr11:21289788..21289812 (25 bp)
GGGCATCTTCACGTTCGACGGCCGG
LOC_Os11g36940
OsAffx.31336.1.S1_at--778--7771Chr11:21289860..21289884 (25 bp)
GGTGCCGGCGAAGGGCGTCAAGTAC
LOC_Os11g36940
OsAffx.31336.1.S1_at--906--7191Chr11:21289954..21289978 (25 bp)
GTCGGGTACGCGTGCTCGCACTCCG
LOC_Os11g36940
OsAffx.31336.1.S1_at--981--7791Chr11:21289958..21289982 (25 bp)
GGTACGCGTGCTCGCACTCCGACTG
LOC_Os11g36940
OsAffx.31336.1.S1_at--599--3971Chr11:21290026..21290050 (25 bp)
CGTGGGAACGCGTCGTACGCGTTCA
LOC_Os11g36940
OsAffx.31336.1.S1_at--190--10511Chr11:21290047..21290071 (25 bp)
TTCAACGTGTACTACCAGGCGCAGG
LOC_Os11g36940
OsAffx.31336.1.S1_at--641--9711Chr11:21290048..21290072 (25 bp)
TCAACGTGTACTACCAGGCGCAGGG
LOC_Os11g36940
OsAffx.31336.1.S1_at--511--9671Chr11:21290114..21290138 (25 bp)
TCACCGAAGACGACAGGGACGTGGC
LOC_Os11g36940
OsAffx.31336.1.S1_at--539--1091Chr11:21290141..21290165 (25 bp)
AGGGCGCCTGCAACTTCAGCGTGCA
LOC_Os11g36940
Target Sequence 
GCGCGCATCGAGGTGTACCTGTTCGGGCTGATGGACGAGGACACCAAGAGCGTGGCGCCGGGCAACTTCGAGCGCCACTG
GGGCATCTTCACGTTCGACGGCCGGCCCAAGTTCCCGCTCGACCTCCGCGGCGCCGGGCGGCCGGCGATGCCGGTGCCGG
CGAAGGGCGTCAAGTACCTGCCACGGCGGTGGTGCGTGCTGAACCCGAACGTGACGGACGACGACGCCGGCCGGCTCGCC
GACAACGTCGGGTACGCGTGCTCGCACTCCGACTGCACGGCGCTCGGCTACGGGTGCAGCTGCGGCGCGCTCGACGCGCG
TGGGAACGCGTCGTACGCGTTCAACGTGTACTACCAGGCGCAGGGGCAGGCCGACGCGGCGTGCGACTTCCAGGGGCTCG
CCGTCGTCACCGAAGACGACAGGGACGTGGCGCAGGGCGCCTGCAACTTCAGCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis