Browse Element(s) Details


OsAffx.31337.1.S1_at

Description tigr:9639.m03340
TID=OsAffx.31337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3695010/11T-complex protein 1, theta subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36950OsAffx.31337.1.S1_at10/1111+21295469..21297132T-complex protein 1, theta subunit, putative
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31337.1.S1_at--813--3671NONE
CTATTGCACTTTGCTCTTCCAAAAA
NONE
OsAffx.31337.1.S1_at--961--2131Chr11:21296656..21296680 (25 bp)
ACAGTTGAAACTGAGCCAGCCAAAT
LOC_Os11g36950
OsAffx.31337.1.S1_at--379--1971Chr11:21296665..21296689 (25 bp)
ACTGAGCCAGCCAAATGCGGATGAA
LOC_Os11g36950
OsAffx.31337.1.S1_at--561--5711Chr11:21296702..21296726 (25 bp)
GACTCTGTTTCGCTGGAAGATATTG
LOC_Os11g36950
OsAffx.31337.1.S1_at--252--2731Chr11:21296830..21296854 (25 bp)
AAGAAGGTCGAAACTCGGTGGCTAT
LOC_Os11g36950
OsAffx.31337.1.S1_at--252--2551Chr11:21296841..21296865 (25 bp)
AACTCGGTGGCTATTGCTGTCTTAA
LOC_Os11g36950
OsAffx.31337.1.S1_at--754--8491Chr11:21296848..21296872 (25 bp)
TGGCTATTGCTGTCTTAAGAGGCAG
LOC_Os11g36950
OsAffx.31337.1.S1_at--782--6491Chr11:21296877..21296901 (25 bp)
GATAGTATACTGGATGATCTCGGAA
LOC_Os11g36950
OsAffx.31337.1.S1_at--475--9511Chr11:21296894..21296918 (25 bp)
TCTCGGAAGAGCTGTTGATGACGGT
LOC_Os11g36950
OsAffx.31337.1.S1_at--483--6311Chr11:21296910..21296933 (24 bp)
GATGACGGTGTCAACACTTACAAGT
LOC_Os11g36950
OsAffx.31337.1.S1_at--853--7931Chr11:21297053..21297077 (25 bp)
GGATTATTCCTGGTGCCGCAGCAAC
LOC_Os11g36950
Target Sequence 
CTATTGCACTTTGCTCTTCCAAAAAACAGTTGAAACTGAGCCAGCCAAATGCGGATGAATTAGGATATGCAGACTCTGTT
TCGCTGGAAGATATTGGAGGTGTTCGAAATGAAGAAGGTCGAAACTCGGTGGCTATTGCTGTCTTAAGAGGCAGCACTGA
TAGTATACTGGATGATCTCGGAAGAGCTGTTGATGACGGTGTCAACACTTACAAGTCAATGTGCAGGGATAGTCGGATTA
TTCCTGGTGCCGCAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis