Browse Element(s) Details


OsAffx.31373.1.S1_at

Description tigr:9639.m03524
TID=OsAffx.31373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3878011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38770OsAffx.19239.1.S1_at11/1111+22556906..22557789NA
LOC_Os11g38780OsAffx.31373.1.S1_at11/1111+22559202..22559777EF hand family protein
LOC_Os11g38790NANA11+22562352..22562676hypothetical protein
LOC_Os11g38800Os.6005.1.S1_at11/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38800OsAffx.31374.1.S1_at8/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31373.1.S1_at--385--8531Chr11:22559716..22559740 (25 bp)
TGGAGTCCCAAGAACCGGTTTGCCT
LOC_Os11g38780
OsAffx.31373.1.S1_at--135--571Chr11:22559687..22559711 (25 bp)
ATCCTCTTCACCATGTTTACCTGGT
LOC_Os11g38780
OsAffx.31373.1.S1_at--645--9971Chr11:22559670..22559694 (25 bp)
TACCTGGTTCATCTCGAAGGTTCAG
LOC_Os11g38780
OsAffx.31373.1.S1_at--603--5311Chr11:22559655..22559679 (25 bp)
GAAGGTTCAGATGATCCTCCCTAGT
LOC_Os11g38780
OsAffx.31373.1.S1_at--678--4291Chr11:22559636..22559660 (25 bp)
CCTAGTTCTTGCCAACACTGCAATT
LOC_Os11g38780
OsAffx.31373.1.S1_at--390--9011Chr11:22559618..22559642 (25 bp)
TGCAATTATGCCGTCACCAAGGTGA
LOC_Os11g38780
OsAffx.31373.1.S1_at--1146--9351Chr11:22559591..22559615 (25 bp)
TCGACACCGGTTCTCGCCGACAGAA
LOC_Os11g38780
OsAffx.31373.1.S1_at--882--7531Chr11:22559483..22559507 (25 bp)
GGGCCTGATTTTGATCACGGAAAAA
LOC_Os11g38780
OsAffx.31373.1.S1_at--883--8031Chr11:22559445..22559469 (25 bp)
GGAGATTGGTTCTAACTGCATGTCA
LOC_Os11g38780
OsAffx.31373.1.S1_at--1132--1971Chr11:22559431..22559455 (25 bp)
ACTGCATGTCAGAGTTGTTCGATGA
LOC_Os11g38780
OsAffx.31373.1.S1_at--1092--2711Chr11:22559381..22559405 (25 bp)
AAGCAGGCATTTTTGGTGTTTGATG
LOC_Os11g38780
Target Sequence 
TGGAGTCCCAAGAACCGGTTTGCCTCCTCATCCTCTTCACCATGTTTACCTGGTTCATCTCGAAGGTTCAGATGATCCTC
CCTAGTTCTTGCCAACACTGCAATTATGCCGTCACCAAGGTGACCTCGACACCGGTTCTCGCCGACAGAAAGATATCAAA
GAATCTAAGTAAGCATAAAGATGATGGGATAGAGATGACACATGAAGATGTTGAGTCTGTGATGACAAAGATGGGGCCTG
ATTTTGATCACGGAAAAACTATGGTTTACAAGGAGATTGGTTCTAACTGCATGTCAGAGTTGTTCGATGACGATGAACCG
AGCTTGGACGAAGTAAAGCAGGCATTTTTGGTGTTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis