Browse Element(s) Details


OsAffx.31388.1.S1_at

Description tigr:9639.m03605
TID=OsAffx.31388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3950011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39460NANA11+22998545..23000528hypothetical protein
LOC_Os11g39470OsAffx.31386.1.S1_at9/1111+23001053..23003591hypothetical protein
LOC_Os11g39470Os.54691.1.S1_x_at1/1111+23001053..23003591hypothetical protein
LOC_Os11g39480OsAffx.31387.1.S1_at11/1111+23005292..23005957Jacalin-like lectin domain containing protein
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified
LOC_Os11g39520OsAffx.19255.1.S1_at10/1111+23033794..23034773hypothetical protein
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31388.1.S1_at--624--4751Chr11:23012999..23013023 (25 bp)
GCTGAGCTTGCCAGATCCGTTCTCG
LOC_Os11g39500
OsAffx.31388.1.S1_at--917--3431Chr11:23013010..23013034 (25 bp)
CAGATCCGTTCTCGCTATCTTCGTC
LOC_Os11g39500
OsAffx.31388.1.S1_at--840--431Chr11:23013026..23013050 (25 bp)
ATCTTCGTCTCTCCCAGGCTGCTAA
LOC_Os11g39500
OsAffx.31388.1.S1_at--645--5791Chr11:23013063..23013087 (25 bp)
GAGCTCGGGTAGTGGACTCGCCGGC
LOC_Os11g39500
OsAffx.31388.1.S1_at--561--8371Chr11:23013149..23013173 (25 bp)
GGCGATGCTCTCCTCTATTTGGCGG
LOC_Os11g39500
OsAffx.31388.1.S1_at--918--9491Chr11:23013157..23013181 (25 bp)
TCTCCTCTATTTGGCGGCGTCGGGC
LOC_Os11g39500
OsAffx.31388.1.S1_at--454--9691Chr11:23013210..23013234 (25 bp)
TCACGTGTCGCAGAGTGTGGGCCCA
LOC_Os11g39500
OsAffx.31388.1.S1_at--675--1331Chr11:23013221..23013245 (25 bp)
AGAGTGTGGGCCCACCTGCGCAAAA
LOC_Os11g39500
OsAffx.31388.1.S1_at--215--8411Chr11:23013229..23013253 (25 bp)
GGCCCACCTGCGCAAAACTGACGAG
LOC_Os11g39500
OsAffx.31388.1.S1_at--693--2551Chr11:23013244..23013268 (25 bp)
AACTGACGAGGAACTTGTAGCCAAA
LOC_Os11g39500
OsAffx.31388.1.S1_at--163--4071Chr11:23013250..23013274 (25 bp)
CGAGGAACTTGTAGCCAAAGATGGC
LOC_Os11g39500
Target Sequence 
GCTGAGCTTGCCAGATCCGTTCTCGCTATCTTCGTCTCTCCCAGGCTGCTAACGCCGCCCCGTCGAGCTCGGGTAGTGGA
CTCGCCGGCGACGACCGCCGCCCCCTTGCATGGGGTGTGTGGGGGCATCGCATGGGGGCTTGTCCTCTCCGGCGATGCTC
TCCTCTATTTGGCGGCGTCGGGCGGTGGAAGTGAGGAGGGCAGCGTCGGCGTCACGTGTCGCAGAGTGTGGGCCCACCTG
CGCAAAACTGACGAGGAACTTGTAGCCAAAGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis