Browse Element(s) Details


OsAffx.31401.1.S1_at

Description tigr:9639.m03690
TID=OsAffx.31401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4033010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein
LOC_Os11g40310NANA11+23530157..23530441hypothetical protein
LOC_Os11g40320OsAffx.19272.1.S1_s_at11/1111+23536078..23538270expressed protein
LOC_Os11g40320OsAffx.19272.1.S1_at11/1111+23536078..23538270expressed protein
LOC_Os11g40330OsAffx.31401.1.S1_at10/1111+23539438..23541288hypothetical protein
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31401.1.S1_at--175--5811NONE
GACGCGGCGAGTGGCGAGTCACTGA
NONE
OsAffx.31401.1.S1_at--801--6091Chr11:23539586..23539608 (23 bp)
GAGTCACTGACAAGGAGGCTGTCAA
LOC_Os11g40330
OsAffx.31401.1.S1_at--459--8391Chr11:23539558..23539582 (25 bp)
GGCGACATCCATCAGAGAGACCGGT
LOC_Os11g40330
OsAffx.31401.1.S1_at--852--3531Chr11:23539553..23539577 (25 bp)
CATCCATCAGAGAGACCGGTGCAGA
LOC_Os11g40330
OsAffx.31401.1.S1_at--136--9651Chr11:23539547..23539571 (25 bp)
TCAGAGAGACCGGTGCAGAACAGAA
LOC_Os11g40330
OsAffx.31401.1.S1_at--995--1351Chr11:23539543..23539567 (25 bp)
AGAGACCGGTGCAGAACAGAAGCAA
LOC_Os11g40330
OsAffx.31401.1.S1_at--113--2091Chr11:23539528..23539552 (25 bp)
ACAGAAGCAAAAGACCGTGCCGGTT
LOC_Os11g40330
OsAffx.31401.1.S1_at--291--1391Chr11:23539517..23539541 (25 bp)
AGACCGTGCCGGTTGATGAACAGGA
LOC_Os11g40330
OsAffx.31401.1.S1_at--155--5011Chr11:23539488..23539512 (25 bp)
GCAGGAAAGAACTTGAAGCCTTCAA
LOC_Os11g40330
OsAffx.31401.1.S1_at--1063--2631Chr11:23539473..23539497 (25 bp)
AAGCCTTCAAGACTCGTTAAGCCCA
LOC_Os11g40330
OsAffx.31401.1.S1_at--470--10511Chr11:23539468..23539492 (25 bp)
TTCAAGACTCGTTAAGCCCAATCGT
LOC_Os11g40330
Target Sequence 
GACGCGGCGAGTGGCGAGTCACTGACAAGGAGGCTGTCAAGAAGGCGACATCCATCAGAGAGACCGGTGCAGAACAGAAG
CAAAAGACCGTGCCGGTTGATGAACAGGAGGGAGCAGGAAAGAACTTGAAGCCTTCAAGACTCGTTAAGCCCAATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis