Browse Element(s) Details


OsAffx.31428.1.S1_s_at

Description tigr:9639.m03806
TID=OsAffx.31428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4141011/11expressed protein
LOC_Os09g071201/11DNA-directed RNA polymerase 1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein
LOC_Os11g41460NANA11+24369785..24371791hypothetical protein
LOC_Os11g41470OsAffx.10632.1.S1_at1/1111+24372641..24375671retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31428.1.S1_s_at--354--2831Chr11:24347330..24347353 (24 bp)
AAGTTCACACCATAGATGTAGGAGA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--541--1352Chr11:24347308..24347332 (25 bp)
AGAGAGCAACAGTAATGGCAAGGGC
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--679--9791Chr11:24347155..24347179 (25 bp)
TAAGAAGATACATCGCACTGCTTGC
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--251--851Chr11:24347108..24347132 (25 bp)
ATGGCAGTACTTACACCGCTGATCA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--359--2171Chr11:24347096..24347120 (25 bp)
ACACCGCTGATCAAGTTCAGCGCCA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--572--4391Chr11:24347075..24347099 (25 bp)
GCCACTATAGGTGTCACAAAGAGAA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--496--2651Chr11:24346852..24346876 (25 bp)
AAGCCAATTCAGTTCTTCGACAAAT
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--78--6831Chr11:24346817..24346841 (25 bp)
GTTTAGTGGTTCCTCAGCCAATGGA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--531--8171Chr11:24346795..24346819 (25 bp)
GGAACATATATGCAAGATCCTTCTA
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--729--5171Chr11:24346784..24346808 (25 bp)
GCAAGATCCTTCTAGTGCTACTGAT
LOC_Os11g41410
OsAffx.31428.1.S1_s_at--515--7531Chr11:24346639..24346663 (25 bp)
GTGGCAACCCTTAGTGCAGCTGCAT
LOC_Os11g41410
Target Sequence 
AAGTTCACACCATAGATGTAGGAGAGAGCAACAGTAATGGCAAGGGCAAAGGCAAAGGCAAGGCAGGCAAAGGGGTTGTG
AGGGCAAAACCTATAAATTGGCCCCCAGCACTCTGTAAATTTCTTATTGATTGGTACATTGAAAAAAAGTTGAAGTTGCC
ACCAAAAGGAGTAATTAAGAAGATACATCGCACTGCTTGCACATCAGCTATAAATGCAAAGTATGGCAGTACTTACACCG
CTGATCAAGTTCAGCGCCACTATAGGTGTCACAAAGAGAATTGGGGGCTGATAAATGGCCGTGGAATTCTTTCAAAGCCA
ATTCAGTTCTTCGACAAATTGCAAGAATTGTTTAGTGGTTCCTCAGCCAATGGAACATATATGCAAGATCCTTCTAGTGC
TACTGATTTTGATGATGAGACTGAAGACTTTGATTTTCTTAATGATATGTCAACCTATGCTGAAACCAAAGTTCCACAGG
GGGAAGACTCAGACAAGTTAGAGTCAGATAGTGATGATTGCAAGGAGGTGGCAACCCTTAGTGCAGCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31428.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis