Browse Element(s) Details


OsAffx.31434.1.S1_at

Description tigr:9635.m04573
TID=OsAffx.31434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g420509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31434.1.S1_at--1076--412Chr11:24795228..24795252 (25 bp)
ATCATCGTCATCATCCCAGTACTGG
LOC_Os11g42050
OsAffx.31434.1.S1_at--1059--413Chr05:29507303..29507324 (22 bp)
ATCATCCCAGTACTGGCTCATCATC
NONE
OsAffx.31434.1.S1_at--5--8333Chr05:29507314..29507338 (25 bp)
GGCTCATCATCTTGAGCGATCACTA
NONE
OsAffx.31434.1.S1_at--611--6452Chr11:24795188..24795212 (25 bp)
GATCACTAAATCATCCTCAACCTGA
LOC_Os11g42050
OsAffx.31434.1.S1_at--945--3532Chr11:24795177..24795201 (25 bp)
CATCCTCAACCTGATTACCATTTGG
LOC_Os11g42050
OsAffx.31434.1.S1_at--138--10872Chr11:24795152..24795176 (25 bp)
TTGGATGGATCGAACGTACAGGACA
LOC_Os11g42050
OsAffx.31434.1.S1_at--387--7032Chr11:24795137..24795161 (25 bp)
GTACAGGACATGCATCGGATCGATC
LOC_Os11g42050
OsAffx.31434.1.S1_at--1086--7952Chr11:24795121..24795145 (25 bp)
GGATCGATCAATCACGAACCTGTTG
LOC_Os11g42050
OsAffx.31434.1.S1_at--853--4832Chr11:24795094..24795118 (25 bp)
GCTCAAACAGCTGGCGATGCGTCTT
LOC_Os11g42050
OsAffx.31434.1.S1_at--705--7371Chr07:27144977..27145001 (25 bp)
GTGACGCATACCTGAGCATGAGCGA
NONE
OsAffx.31434.1.S1_at--603--9972Chr11:24794956..24794988 (25 bp)
TACCTGAGCATGAGCGACAGCGAGT
NONE
Target Sequence 
ATCATCGTCATCATCCCAGTACTGGCTCATCATCTTGAGCGATCACTAAATCATCCTCAACCTGATTACCATTTGGTTGG
ATGGATCGAACGTACAGGACATGCATCGGATCGATCAATCACGAACCTGTTGGGGCTCAAACAGCTGGCGATGCGTCTTG
AGTTGGAAGAAGAGGTAGGCGATGAGCATGACGATGCTGCAGGCACACGACAGGTCGAGGGCGGCGTCGCCGGAGACGAT
GGCGTGCTCGCCGGAGGTGACGCATACCTGAGCATGAGCGACAGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis