Browse Element(s) Details


OsAffx.31449.1.S1_at

Description tigr:9639.m03958
TID=OsAffx.31449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein
LOC_Os11g42910OsAffx.23514.1.S1_at10/1111+25357604..25364961hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31449.1.S1_at--461--9011Chr11:25334013..25334037 (25 bp)
TGAATATCTTCGCACCGGTCAGCGT
LOC_Os11g42890
OsAffx.31449.1.S1_at--818--4251Chr11:25333999..25334023 (25 bp)
CCGGTCAGCGTGTAGTTTTGCCTAA
LOC_Os11g42890
OsAffx.31449.1.S1_at--88--8151Chr11:25333868..25333892 (25 bp)
GGACAATGTGATGACTCTTCTTTAG
LOC_Os11g42890
OsAffx.31449.1.S1_at--452--6311Chr11:25333626..25333650 (25 bp)
GATGAGCTGCTACATCAGTGCTTTA
LOC_Os11g42890
OsAffx.31449.1.S1_at--1004--2071Chr11:25333615..25333639 (25 bp)
ACATCAGTGCTTTAACGTGGAACAT
LOC_Os11g42890
OsAffx.31449.1.S1_at--79--1971Chr11:25333560..25333584 (25 bp)
ACTGTCAAGATGAAGGCGCCCTGTT
LOC_Os11g42890
OsAffx.31449.1.S1_at--905--4551Chr11:25333545..25333569 (25 bp)
GCGCCCTGTTCAACTGATTGGACAT
LOC_Os11g42890
OsAffx.31449.1.S1_at--553--2451Chr11:25333479..25333503 (25 bp)
AAAATTTACTTCTGCTCTCCTTTAG
LOC_Os11g42890
OsAffx.31449.1.S1_at--1156--3751Chr11:25333465..25333489 (25 bp)
CTCTCCTTTAGAGCCCAATGAAGAT
LOC_Os11g42890
OsAffx.31449.1.S1_at--861--8351Chr11:25333308..25333332 (25 bp)
GGCGTGTTTGATCGAGGCTTTCCAA
LOC_Os11g42890
OsAffx.31449.1.S1_at--832--6191Chr11:25333295..25333319 (25 bp)
GAGGCTTTCCAACTCAAGTGTTCCC
LOC_Os11g42890
Target Sequence 
TGAATATCTTCGCACCGGTCAGCGTGTAGTTTTGCCTAAGGTTGAATTTAGTGATGATGAATCAAGTTCTGAGCAGTTTT
TGCTAGAAAAATCTGAAGATCAATCAACACTAGAACCGGAACATGACAAATCAGCTGTGACACAAGGACAATGTGATGAC
TCTTCTTTAGAAGGAATCACTCAGAACGGGAAAAAGTGGATGAGTGAGGAGGCGATGGTAGCATTTGAAAAGTATATTAC
AAGAAGAGATGATCTTAAGGAATATGATTACCAATTTGATGAGCTGCTACATCAGTGCTTTAACGTGGAACATTATTACA
AGATTTTTCATCACTTCAACTTCACTGTCAAGATGAAGGCGCCCTGTTCAACTGATTGGACATCGGTGTTATATTTTGCC
GAAGTGAAGGAATTATTGGGCCATAAAATTTACTTCTGCTCTCCTTTAGAGCCCAATGAAGATGGTAATTGCTATGCATG
TAAGAACCAAGGGATGGAGAATTTGAAGCATCCAATAGTTGGCGTGTTTGATCGAGGCTTTCCAACTCAAGTGTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis