Browse Element(s) Details


OsAffx.31462.2.S1_at

Description tigr:9633.m01987
TID=OsAffx.31462.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2260011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22540NANA5+12721701..12724816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22550NANA5+12727277..12729145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22560NANA5+12734940..12737629retrotransposon protein, putative, unclassified
LOC_Os05g22570NANA5+12738368..12738742retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22894.1.S1_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22927.1.S1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22711.4.A1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22590NANA5+12744891..12747272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g22600OsAffx.31462.2.S1_at11/115+12747728..12753150hypothetical protein
LOC_Os05g22614Os.10522.2.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.1.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.2.S1_x_at11/115+12755754..12761715expressed protein
LOC_Os05g22630OsAffx.26970.1.S1_at10/115+12766613..12768414hypothetical protein
LOC_Os05g22640NANA5+12770438..12771166hypothetical protein
LOC_Os05g22650Os.45212.1.S1_x_at8/115+12773649..12779882retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31462.2.S1_at--696--1331Chr05:12750338..12750362 (25 bp)
AGAGGTCCTCAACCTCGCTGGTGAG
LOC_Os05g22600
OsAffx.31462.2.S1_at--810--7751Chr05:12750357..12750557 (25 bp)
GGTGAGTCCTACTGCCACAGGAGAA
LOC_Os05g22600
OsAffx.31462.2.S1_at--510--9711Chr05:12750559..12750583 (25 bp)
TCAAGCCAGAGGATGCTCCGTTGAG
LOC_Os05g22600
OsAffx.31462.2.S1_at--805--7691Chr05:12751281..12751305 (25 bp)
GGGTCACTATACGAGCTCAACAAGA
LOC_Os05g22600
OsAffx.31462.2.S1_at--896--6671Chr05:12751311..12751335 (25 bp)
GTTGCTGCTTCATCAACGATGGCTT
LOC_Os05g22600
OsAffx.31462.2.S1_at--877--351Chr05:12752595..12752616 (22 bp)
ATAAGCATGGGTACACTGGTCGCAG
LOC_Os05g22600
OsAffx.31462.2.S1_at--1071--2351Chr05:12752643..12752667 (25 bp)
AAAGCCAGGAGCTGATCGCACTTCA
LOC_Os05g22600
OsAffx.31462.2.S1_at--61--6491Chr05:12752677..12752701 (25 bp)
GATACTCTGCATGTTTTTTCCAAAG
LOC_Os05g22600
OsAffx.31462.2.S1_at--628--6591Chr05:12752958..12752982 (25 bp)
GATTGTTTGACGACAGCGACTGCTG
LOC_Os05g22600
OsAffx.31462.2.S1_at--26--4111Chr05:12752974..12753047 (25 bp)
CGACTGCTGCAGAGTTGTTGGGCAT
LOC_Os05g22600
OsAffx.31462.2.S1_at--984--9031Chr05:12753065..12753089 (25 bp)
TGCAGCGACTCGGTGGATTGCAGAT
LOC_Os05g22600
Target Sequence 
AGAGGTCCTCAACCTCGCTGGTGAGTCCTACTGCCACAGGAGAAATCAAGCCAGAGGATGCTCCGTTGAGAACTATTGCA
TAGAAATTCTAAGAAAGGCAAGTTACTGGCTTTATGGTATTGGAGTTGGGGTCACTATACGAGCTCAACAAGAAGTCAGT
TGCTGCTTCATCAACGATGGCTTAATCCATAAGCATGGGTACACTGGTCGCAGTTGTGTGCCCCTAGAAGGCCTTGTAAA
AAGCCAGGAGCTGATCGCACTTCATAGAAATCTGATACTCTGCATGTTTTTTCCAAAGAAACCATATGAAGTGTTCCTGG
AATTTGGTGGATATGGCCAGAGTGATATCCTCATAAGGAAATCAAAAGCAAGGGTTATGAAGCCCTCATTCACAGTTGTC
CGCGATAAAAGTACTAAATCCTTCATCCTTTTCATTCGGGGCGCTACAAGTGTTAAGGATTGTTTGACGACAGCGACTGC
TGCAGAGTTGTTGGGCATGTGCATTGCGGAATGGTTGCAGCGACTCGGTGGATTGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31462.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis