Browse Element(s) Details


Os.10522.1.S1_at

Description gb:AK108453.1
DB_XREF= gi:32993662
TID=Os.10522.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C11, full insert sequence.
FL= gb:AK108453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2261411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22560NANA5+12734940..12737629retrotransposon protein, putative, unclassified
LOC_Os05g22570NANA5+12738368..12738742retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22894.1.S1_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22927.1.S1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22711.4.A1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22590NANA5+12744891..12747272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g22600OsAffx.31462.2.S1_at11/115+12747728..12753150hypothetical protein
LOC_Os05g22614Os.10522.2.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.1.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.2.S1_x_at11/115+12755754..12761715expressed protein
LOC_Os05g22630OsAffx.26970.1.S1_at10/115+12766613..12768414hypothetical protein
LOC_Os05g22640NANA5+12770438..12771166hypothetical protein
LOC_Os05g22650Os.45212.1.S1_x_at8/115+12773649..12779882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22660OsAffx.25156.2.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.1.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.5.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.4.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10522.1.S1_at--330--3211Chr05:12760560..12760584 (25 bp)
CAAGGTACTGGTTTACATGTGCCAT
LOC_Os05g22614
Os.10522.1.S1_at--380--3511Chr05:12760545..12760569 (25 bp)
CATGTGCCATATGTTCAACCTTTGC
LOC_Os05g22614
Os.10522.1.S1_at--551--10111Chr05:12760536..12760560 (25 bp)
TATGTTCAACCTTTGCATGCCAACG
LOC_Os05g22614
Os.10522.1.S1_at--697--4391Chr05:12760518..12760542 (25 bp)
GCCAACGCATTTGAAAGCATCATTG
LOC_Os05g22614
Os.10522.1.S1_at--710--4971Chr05:12760502..12760526 (25 bp)
GCATCATTGTAATTAGGCACTCTGT
LOC_Os05g22614
Os.10522.1.S1_at--232--10091Chr05:12760489..12760513 (25 bp)
TAGGCACTCTGTTCTGTTGGTAGTT
LOC_Os05g22614
Os.10522.1.S1_at--49--8771Chr05:12760475..12760499 (25 bp)
TGTTGGTAGTTCTGCCCTGGTAGTC
LOC_Os05g22614
Os.10522.1.S1_at--650--8571Chr05:12760458..12760482 (25 bp)
TGGTAGTCCCACGAGGAACTTGTAT
LOC_Os05g22614
Os.10522.1.S1_at--864--2531Chr05:12760404..12760428 (25 bp)
AACTCAGAAGTAGATTGCCTCGCGT
LOC_Os05g22614
Os.10522.1.S1_at--404--9191Chr05:12759991..12760413 (25 bp)
TGCCTCGCGTTTGTGGTTACTATAT
LOC_Os05g22614
Os.10522.1.S1_at--690--6771Chr05:12760374..12760680 (25 bp)
GTTACTATATTCATGACAGACACTG
LOC_Os05g22614
Target Sequence 
CAAGGTACTGGTTTACATGTGCCATATGTTCAACCTTTGCATGCCAACGCATTTGAAAGCATCATTGTAATTAGGCACTC
TGTTCTGTTGGTAGTTCTGCCCTGGTAGTCCCACGAGGAACTTGTATGGAACAGGAAGGTTCTTGTGATTAGTCAGAACT
CAGAAGTAGATTGCCTCGCGTTTGTGGTTACTATATTCATGACAGACACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis