Browse Element(s) Details


Os.10522.2.S1_x_at

Description gb:AK073234.1
DB_XREF= gi:32983257
TID=Os.10522.2
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024F08, full insert sequence.
FL= gb:AK099865.1 gb:AK073234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2261411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22560NANA5+12734940..12737629retrotransposon protein, putative, unclassified
LOC_Os05g22570NANA5+12738368..12738742retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22894.1.S1_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22927.1.S1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22580OsAffx.22711.4.A1_x_at1/115+12739078..12740194retrotransposon protein, putative, unclassified
LOC_Os05g22590NANA5+12744891..12747272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g22600OsAffx.31462.2.S1_at11/115+12747728..12753150hypothetical protein
LOC_Os05g22614Os.10522.2.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.1.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.2.S1_x_at11/115+12755754..12761715expressed protein
LOC_Os05g22630OsAffx.26970.1.S1_at10/115+12766613..12768414hypothetical protein
LOC_Os05g22640NANA5+12770438..12771166hypothetical protein
LOC_Os05g22650Os.45212.1.S1_x_at8/115+12773649..12779882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22660OsAffx.25156.2.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.1.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.5.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.4.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10522.2.S1_x_at--918--1451Chr05:12756305..12756329 (25 bp)
AGAAGACGCCCTCTGATGAGGCAGC
LOC_Os05g22614
Os.10522.2.S1_x_at--467--2771Chr05:12756303..12756327 (25 bp)
AAGACGCCCTCTGATGAGGCAGCTG
LOC_Os05g22614
Os.10522.2.S1_x_at--972--4531Chr05:12756298..12756322 (25 bp)
GCCCTCTGATGAGGCAGCTGCAAGT
LOC_Os05g22614
Os.10522.2.S1_x_at--1049--5051Chr05:12756285..12756309 (25 bp)
GCAGCTGCAAGTGAGGCGCAAGCTT
LOC_Os05g22614
Os.10522.2.S1_x_at--313--1611Chr05:12756283..12756307 (25 bp)
AGCTGCAAGTGAGGCGCAAGCTTCT
LOC_Os05g22614
Os.10522.2.S1_x_at--887--1411Chr05:12756254..12756278 (25 bp)
AGAACCTTCTGAGCAGAGCCAAAGG
LOC_Os05g22614
Os.10522.2.S1_x_at--389--8911Chr05:12756245..12756269 (25 bp)
TGAGCAGAGCCAAAGGGTTCGGCAC
LOC_Os05g22614
Os.10522.2.S1_x_at--209--2431Chr05:12756115..12756139 (25 bp)
AAAAGCAAAGAAGCTGGCACCACAG
LOC_Os05g22614
Os.10522.2.S1_x_at--81--4591Chr05:12756069..12756093 (25 bp)
GCGCAGAAGACAAGACCAACACCAA
LOC_Os05g22614
Os.10522.2.S1_x_at--226--7631Chr05:12756004..12756028 (25 bp)
GGGACTCTTCAAGCAAGAAACAATC
LOC_Os05g22614
Os.10522.2.S1_x_at--959--5131Chr05:12755992..12756016 (25 bp)
GCAAGAAACAATCTTTGTGGATGAG
LOC_Os05g22614
Target Sequence 
AGAAGACGCCCTCTGATGAGGCAGCTGCAAGTGAGGCGCAAGCTTCTCTGGAGAACCTTCTGAGCAGAGCCAAAGGGTTC
GGCACGGACTTCTCATGGGAGAAGCTCAGCACACAACTTGCAGGAGTGGCCACTCAGGACTCAGACGAGGTGGAACCNAA
ANGCGCAGATCGCCACCGTGAGAGGCCAGGCAAAAGCAAAGAAGCTGGCACCACAGAGAGCTGTTGTGAAGCCCGCGGCG
CAGAAGACAAGACCAACACCAAAGCAGCCGGAATCCAAGCCGGATGTGAGGCCCGTGTTTGGGGGACTCTTCAAGCAAGA
AACAATCTTTGTGGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10522.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis