Browse Element(s) Details


OsAffx.31467.2.S1_at

Description tigr:9639.m04102
TID=OsAffx.31467.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4425011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44230OsAffx.19364.1.S1_at11/1111+26217111..26219293hypothetical protein
LOC_Os11g44240Os.35344.3.S1_x_at8/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240Os.35344.18.S1_x_at5/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_at4/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_x_at3/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44250OsAffx.31467.2.S1_at11/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44250Os.56139.1.S1_at2/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.4.S1_at11/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.3.S1_s_at1/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44270OsAffx.31468.1.S1_at11/1111+26252601..26253000hypothetical protein
LOC_Os11g44280OsAffx.19365.1.S1_at11/1111+26255128..26255409hypothetical protein
LOC_Os11g44290NANA11+26260444..26260713expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31467.2.S1_at--58--5111Chr11:26236398..26236422 (25 bp)
GCACTTGACGGACTTCCTTTGGGCG
LOC_Os11g44250
OsAffx.31467.2.S1_at--377--9251Chr11:26236412..26236436 (25 bp)
TCCTTTGGGCGCTCACATGGGAAGG
LOC_Os11g44250
OsAffx.31467.2.S1_at--244--891Chr11:26236434..26236458 (25 bp)
AGGCCCAGGCCATCAGGAGAATATT
LOC_Os11g44250
OsAffx.31467.2.S1_at--922--8051Chr11:26236449..26236473 (25 bp)
GGAGAATATTATTGGCACCTATGGA
LOC_Os11g44250
OsAffx.31467.2.S1_at--369--8511Chr11:26236461..26236485 (25 bp)
TGGCACCTATGGATACTTGGCCCCG
LOC_Os11g44250
OsAffx.31467.2.S1_at--161--10871Chr11:26236477..26236501 (25 bp)
TTGGCCCCGGAGTGCGTTATAGCAG
LOC_Os11g44250
OsAffx.31467.2.S1_at--1042--6731Chr11:26236492..26236516 (25 bp)
GTTATAGCAGGCACTCTAAACCCGA
LOC_Os11g44250
OsAffx.31467.2.S1_at--1029--10011Chr11:26236496..26236520 (25 bp)
TAGCAGGCACTCTAAACCCGACAGT
LOC_Os11g44250
OsAffx.31467.2.S1_at--563--7611Chr11:26236739..26236763 (25 bp)
GGGAAATGTTTAGTCGTCGCCACAA
LOC_Os11g44250
OsAffx.31467.2.S1_at--271--10411Chr11:26236748..26236772 (25 bp)
TTAGTCGTCGCCACAACTTGGTGTC
LOC_Os11g44250
OsAffx.31467.2.S1_at--1153--5031Chr11:26236878..26236902 (25 bp)
GCAGATGGCAGTACGCTGCCTGCTG
LOC_Os11g44250
Target Sequence 
GCACTTGACGGACTTCCTTTGGGCGCTCACATGGGAAGGCCCAGGCCATCAGGAGAATATTATTGGCACCTATGGATACT
TGGCCCCGGAGTGCGTTATAGCAGGCACTCTAAACCCGACAGTCGATGTCTACAGTTTGGGTGTTGTGATGCTGGAGGTA
TTGACGGGGAAGAAACCATATTTCTCTAAAGAAGAATGGGAAAAGGAGAAGACAGAAGAACGTGTGGAAGAGGAGAAGAG
AGAAGAATGTGAGCAAGAGGGGAAGAACACAGAAGAGGGCAAGGAGAGTGAACGAGAAGAAGATGGGAAGACAAAAGAAG
AATGGCATGAATGGCGAAAGCGGGAAATGTTTAGTCGTCGCCACAACTTGGTGTCCTTCGCGCTGCCACTGATCGAGGCG
GGGGAGGTGTGGAAGGTGCTGGACAAGCGGCCGGCAGCGGAGCCAACGCCGAGGCAGCTGGAGGCAGCGGAACTGGTGGC
GCAGATGGCAGTACGCTGCCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31467.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis