Browse Element(s) Details


Os.56139.1.S1_at

Description gb:AK109326.1
DB_XREF= gi:32994535
TID=Os.56139.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H08, full insert sequence.
FL= gb:AK109326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4442011/11expressed protein
LOC_Os11g442502/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44390Os.49232.1.S1_x_at8/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44390OsAffx.18435.1.S1_x_at1/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44400Os.47463.1.S1_x_at3/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.2987.3.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.14491.2.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.27639.1.S1_x_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400OsAffx.30255.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.53731.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44410Os.35344.18.S1_x_at8/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44410Os.35344.3.S1_x_at6/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44410OsAffx.22940.5.S1_x_at2/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44420Os.56139.1.S1_at11/1111+26368561..26369278expressed protein
LOC_Os11g44430OsAffx.31467.3.S1_at11/1111+26371133..26373240Protein kinase domain containing protein, expressed
LOC_Os11g44430OsAffx.31467.3.S1_s_at11/1111+26371133..26373240Protein kinase domain containing protein, expressed
LOC_Os11g44440Os.47463.1.S1_x_at4/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.14491.2.S1_x_at2/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.27037.1.A1_at1/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44450OsAffx.29789.3.S1_x_at1/1111+26389249..26390729hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56139.1.S1_at--446--3831Chr11:26368731..26368755 (25 bp)
CTGCCGCTCAGGTATACATTGAAAT
LOC_Os11g44420
Os.56139.1.S1_at--414--7612Chr11:26235732..26235762 (24 bp)
GGGAAGACTCAAGCATTCAATTGTT
LOC_Os11g44250
Os.56139.1.S1_at--70--1551Chr11:26368695..26368719 (25 bp)
AGCATTCAATTGTTTGTACTTGTAC
LOC_Os11g44420
Os.56139.1.S1_at--1058--10251Chr11:26368683..26368707 (25 bp)
TTTGTACTTGTACTACTACCAACTG
LOC_Os11g44420
Os.56139.1.S1_at--4--3731Chr11:26368671..26368695 (25 bp)
CTACTACCAACTGCAACTCTTTTGA
LOC_Os11g44420
Os.56139.1.S1_at--389--8812Chr11:26235804..26235827 (24 bp)
TGATTTGGTATTCAGTTCCTCTTTT
LOC_Os11g44250
Os.56139.1.S1_at--477--9251Chr11:26368633..26368657 (25 bp)
TCCTCTTTTCTTTCCGATGTGTATT
LOC_Os11g44420
Os.56139.1.S1_at--274--131Chr11:26368611..26368635 (25 bp)
ATTCATCGATATACTAGGTTGCCAC
LOC_Os11g44420
Os.56139.1.S1_at--841--9651Chr11:26368600..26368624 (25 bp)
TACTAGGTTGCCACAAAGTTTGTTC
LOC_Os11g44420
Os.56139.1.S1_at--969--7891Chr11:26368595..26368619 (25 bp)
GGTTGCCACAAAGTTTGTTCGGACA
LOC_Os11g44420
Os.56139.1.S1_at--929--10771Chr11:26368581..26368605 (25 bp)
TTGTTCGGACAGAAATCCATGGAGT
LOC_Os11g44420
Target Sequence 
CTGCCGCTCAGGTATACATTGAAATGGGAAGACTCAAGCATTCAATTGTTTGTACTTGTACTACTACCAACTGCAACTCT
TTTGATTTGGTATTCAGTTCCTCTTTTCTTTCCGATGTGTATTCATCGATATACTAGGTTGCCACAAAGTTTGTTCGGAC
AGAAATCCATGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis