Browse Element(s) Details


OsAffx.31467.3.S1_at

Description tigr:9639.m04120
TID=OsAffx.31467.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4443011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44400Os.47463.1.S1_x_at3/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.2987.3.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.14491.2.S1_x_at2/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.27639.1.S1_x_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400OsAffx.30255.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400Os.53731.1.S1_at1/1111+26345617..26355765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44410Os.35344.18.S1_x_at8/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44410Os.35344.3.S1_x_at6/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44410OsAffx.22940.5.S1_x_at2/1111+26359168..26364908transposon protein, putative, Mutator sub-class
LOC_Os11g44420Os.56139.1.S1_at11/1111+26368561..26369278expressed protein
LOC_Os11g44430OsAffx.31467.3.S1_at11/1111+26371133..26373240Protein kinase domain containing protein, expressed
LOC_Os11g44430OsAffx.31467.3.S1_s_at11/1111+26371133..26373240Protein kinase domain containing protein, expressed
LOC_Os11g44440Os.47463.1.S1_x_at4/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.14491.2.S1_x_at2/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.27037.1.A1_at1/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44450OsAffx.29789.3.S1_x_at1/1111+26389249..26390729hypothetical protein
LOC_Os11g44460NANA11+26396523..26396867hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31467.3.S1_at--421--7631Chr11:26371529..26371553 (25 bp)
GGGAGAAAGAGGACACGACGCAAAA
LOC_Os11g44430
OsAffx.31467.3.S1_at--1124--5611Chr11:26371518..26371542 (25 bp)
GACACGACGCAAAAACTCCACGAGG
LOC_Os11g44430
OsAffx.31467.3.S1_at--70--5791Chr11:26371513..26371537 (25 bp)
GACGCAAAAACTCCACGAGGATTTG
LOC_Os11g44430
OsAffx.31467.3.S1_at--585--1991Chr11:26371504..26371528 (25 bp)
ACTCCACGAGGATTTGAAAAAGAGG
LOC_Os11g44430
OsAffx.31467.3.S1_at--163--2791Chr11:26371485..26371509 (25 bp)
AAGAGGAGGGACTTGGTGTCCTTCG
LOC_Os11g44430
OsAffx.31467.3.S1_at--583--4131Chr11:26371460..26371484 (25 bp)
CGCTGCCACTGATTGAGGAGGGTAA
LOC_Os11g44430
OsAffx.31467.3.S1_at--375--4371Chr11:26371455..26371479 (25 bp)
CCACTGATTGAGGAGGGTAATCTAC
LOC_Os11g44430
OsAffx.31467.3.S1_at--1090--6011Chr11:26371443..26371467 (25 bp)
GAGGGTAATCTACGGAAGGTGCTGG
LOC_Os11g44430
OsAffx.31467.3.S1_at--157--8531Chr11:26371421..26371445 (25 bp)
TGGACAGGCGGCCATCAGCAGAGCC
LOC_Os11g44430
OsAffx.31467.3.S1_at--207--4071Chr11:26371391..26371415 (25 bp)
CGAGGCAGCTGCAAGCGGTGGAACT
LOC_Os11g44430
OsAffx.31467.3.S1_at--439--2571Chr11:26371370..26371394 (25 bp)
AACTGGTGGCGCACACGGCTGCCCG
LOC_Os11g44430
Target Sequence 
GGGAGAAAGAGGACACGACGCAAAAACTCCACGAGGATTTGAAAAAGAGGAGGGACTTGGTGTCCTTCGCGCTGCCACTG
ATTGAGGAGGGTAATCTACGGAAGGTGCTGGACAGGCGGCCATCAGCAGAGCCAACGCCGAGGCAGCTGCAAGCGGTGGA
ACTGGTGGCGCACACGGCTGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31467.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis