Browse Element(s) Details


OsAffx.31480.1.S1_at

Description tigr:9639.m04167
TID=OsAffx.31480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4485011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44820OsAffx.7415.1.S1_at11/1111+26616130..26616969expressed protein
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein
LOC_Os11g44860OsAffx.19376.1.S1_x_at11/1111+26642585..26646473Protein kinase domain containing protein, expressed
LOC_Os11g44870Os.35688.1.S1_at11/1111+26648502..26650903expressed protein
LOC_Os11g44880OsAffx.19377.1.S1_at11/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44880Os.57189.1.S1_at1/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44890OsAffx.31481.1.S1_at11/1111+26660734..26663541Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31480.1.S1_at--566--7771Chr11:26638120..26638144 (25 bp)
GGTGAACGCCGAGATCGACCGCTGC
LOC_Os11g44850
OsAffx.31480.1.S1_at--1100--4591Chr11:26638206..26638230 (25 bp)
GCGACACGAACACCGACATCGTCGT
LOC_Os11g44850
OsAffx.31480.1.S1_at--482--1831Chr11:26638254..26638278 (25 bp)
ACGCGAACATCGTCGGGACTCATGA
LOC_Os11g44850
OsAffx.31480.1.S1_at--149--1951Chr11:26638281..26638305 (25 bp)
ACGGCGCAGATCAGGTTGACGACAA
LOC_Os11g44850
OsAffx.31480.1.S1_at--160--8511Chr11:26638327..26638351 (25 bp)
TGGCAAGTCCAACTCAGGCGATGAC
LOC_Os11g44850
OsAffx.31480.1.S1_at--629--4491Chr11:26638393..26638417 (25 bp)
GCCGCCGTATTATGGCTACTACTTG
LOC_Os11g44850
OsAffx.31480.1.S1_at--372--8311Chr11:26638406..26638430 (25 bp)
GGCTACTACTTGTATTATTGGCAGT
LOC_Os11g44850
OsAffx.31480.1.S1_at--537--151Chr11:26638419..26638443 (25 bp)
ATTATTGGCAGTGTACCGACGGCCT
LOC_Os11g44850
OsAffx.31480.1.S1_at--437--8651Chr11:26638471..26638495 (25 bp)
TGGGCATTATTGTCACTGCGCCGCC
LOC_Os11g44850
OsAffx.31480.1.S1_at--72--9211Chr11:26638532..26638556 (25 bp)
TGCCAGTGGCACTCGGACAGAGTTG
LOC_Os11g44850
OsAffx.31480.1.S1_at--955--5611Chr11:26638556..26638580 (25 bp)
GACAGTATTCGTCAAATGTTCAGCG
LOC_Os11g44850
Target Sequence 
GGTGAACGCCGAGATCGACCGCTGCCTCCGCGACCTCACCGTCGCCATCGTCTCCCGCATTGACCGCAAGCTCAACGCCG
CCGCCGGCGACACGAACACCGACATCGTCGTCGACGTCGACGTCGTCCCCGCCGACGCGAACATCGTCGGGACTCATGAC
GACGGCGCAGATCAGGTTGACGACAAGGACAACAACGGCGAGCAAGATGGCAAGTCCAACTCAGGCGATGACGTCGTCGG
CGTGCACCACCAGTTCTCGCCGCCGCCGCCGCCGCCGCCGTATTATGGCTACTACTTGTATTATTGGCAGTGTACCGACG
GCCTCGCCGGCGGTTACCACCAGCAGCGGGGTGGGCATTATTGTCACTGCGCCGCCGGAGACGGCCACGGCCACTACTAC
TCGCCGTCGTCGTGCCAGTGGCACTCGGACAGAGTTGACAGTATTCGTCAAATGTTCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis