Browse Element(s) Details


OsAffx.31484.1.S1_at

Description tigr:9639.m04193
TID=OsAffx.31484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4514011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45120NANA11+26801402..26803020hypothetical protein
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31484.1.S1_at--146--8471Chr11:26819766..26819790 (25 bp)
TGGCTGGATGATGGCGTGCTGCCAA
LOC_Os11g45140
OsAffx.31484.1.S1_at--266--7471Chr11:26819730..26819754 (25 bp)
GTGTGCCCTCGCCAGAGCGGCAGTG
LOC_Os11g45140
OsAffx.31484.1.S1_at--912--3611Chr11:26819653..26819677 (25 bp)
CTTGTCGGCGCAGTGGCAACCTCCA
LOC_Os11g45140
OsAffx.31484.1.S1_at--405--1831Chr11:26819625..26819649 (25 bp)
ACGCCCACTGGCGTCTTGACGAGGT
LOC_Os11g45140
OsAffx.31484.1.S1_at--11--3351Chr11:26819620..26819644 (25 bp)
CACTGGCGTCTTGACGAGGTGCAGC
LOC_Os11g45140
OsAffx.31484.1.S1_at--1126--7631Chr11:26819521..26819545 (25 bp)
GGGAGCTTCGACGACCAGTACCTTG
LOC_Os11g45140
OsAffx.31484.1.S1_at--381--5731Chr11:26819512..26819536 (25 bp)
GACGACCAGTACCTTGGCCGCCTTG
LOC_Os11g45140
OsAffx.31484.1.S1_at--73--551Chr11:26819446..26819467 (22 bp)
ATGCGTCGAGGGTGGAATGCTTCTT
LOC_Os11g45140
OsAffx.31484.1.S1_at--839--4051Chr11:26819127..26819461 (25 bp)
CGAGGGTGGAATGCTTCTTTCTTTC
LOC_Os11g45140
OsAffx.31484.1.S1_at--209--5251Chr11:26819119..26819453 (25 bp)
GAATGCTTCTTTCTTTCCTTGGTGC
LOC_Os11g45140
OsAffx.31484.1.S1_at--831--10271Chr11:26819106..26819130 (25 bp)
TTTCCTTGGTGCTTGGCGAGGCCTA
LOC_Os11g45140
Target Sequence 
TGGCTGGATGATGGCGTGCTGCCAAGGTGGGGACCAGTGTGCCCTCGCCAGAGCGGCAGTGGGAGGCCGGCGACGGCGGG
GGTCTGGTGCTGCGAGGAGGCGGATGCGAGGCCCTTGTCGGCGCAGTGGCAACCTCCAGCTACGCCCACTGGCGTCTTGA
CGAGGTGCAGCGGGGCTGCGGGCGCTTGTGGCGACGGTGGCAGCGGCATAGCGGGGAGTGGGTGCTCGTGGAGGCGATGG
CAGCGGGGAGCTTCGACGACCAGTACCTTGGCCGCCTTGGCCGGTTCTGGTCGGTGCAGCAGAGGAGTGTGGGCGATGGT
AGGATGCGTCGAGGGTGGAATGCTTCTTTCTTTCCTTGGTGCTTGGCGAGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis