Browse Element(s) Details


OsAffx.31486.1.S1_at

Description tigr:9639.m04200
TID=OsAffx.31486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4521011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein
LOC_Os11g45200NANA11+26849209..26853980retrotransposon protein, putative, unclassified
LOC_Os11g45210OsAffx.31486.1.S1_at11/1111+26855242..26856382expressed protein
LOC_Os11g45220Os.52846.1.S1_at11/1111+26859994..26861496Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os11g45230OsAffx.21897.5.S1_x_at4/1111+26863725..26866665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31486.1.S1_at--889--5891Chr11:26856324..26856348 (25 bp)
GAGCTCCAGCATCCATGGCTTGTGT
LOC_Os11g45210
OsAffx.31486.1.S1_at--884--851Chr11:26856310..26856334 (25 bp)
ATGGCTTGTGTAAGCTCGGCCTTCT
LOC_Os11g45210
OsAffx.31486.1.S1_at--335--4671Chr11:26856237..26856261 (25 bp)
GCGTGGCGTTCTCCGAGACCAATAA
LOC_Os11g45210
OsAffx.31486.1.S1_at--668--5031Chr11:26856194..26856218 (25 bp)
GCAGATGTACCAAGCTTTTTGTTTC
LOC_Os11g45210
OsAffx.31486.1.S1_at--763--10251Chr11:26856177..26856201 (25 bp)
TTTGTTTCAATCATCCTGGGCTCTA
LOC_Os11g45210
OsAffx.31486.1.S1_at--770--9271Chr11:26856082..26856188 (25 bp)
TCCTGGGCTCTATGACAGTGATACT
LOC_Os11g45210
OsAffx.31486.1.S1_at--29--5971Chr11:26856037..26856061 (25 bp)
GAGAATGCGAGCAATCGTCGAGTTA
LOC_Os11g45210
OsAffx.31486.1.S1_at--624--7211Chr11:26856021..26856045 (25 bp)
GTCGAGTTAGTTTGTCGTCTTGAAA
LOC_Os11g45210
OsAffx.31486.1.S1_at--1106--8111Chr11:26855407..26855431 (25 bp)
GGACTGGACATCTTGCACCATTGAA
LOC_Os11g45210
OsAffx.31486.1.S1_at--333--5691Chr11:26855367..26855391 (25 bp)
GACTTGCCGATTGTCCCGCAATGGA
LOC_Os11g45210
OsAffx.31486.1.S1_at--401--5431Chr11:26855330..26855354 (25 bp)
GAACCCGAACCATGACAGTCGGTGA
LOC_Os11g45210
Target Sequence 
GAGCTCCAGCATCCATGGCTTGTGTAAGCTCGGCCTTCTCCCCCGGTGGCTGCGGCGTGCAGGTCTTGCCGGCGACGACG
GCGGCGGGCGTGGCGTTCTCCGAGACCAATAAGGGTTACTCTGAACTGAAGCAGATGTACCAAGCTTTTTGTTTCAATCA
TCCTGGGCTCTATGACAGTGATACTGGTTGTGATGAATATGTGAAGAGAATGCGAGCAATCGTCGAGTTAGTTTGTCGTC
TTGAAAAAGAAGGCCAGGACTGGACATCTTGCACCATTGAATGGGACAGCGAGAGGGACTTGCCGATTGTCCCGCAATGG
ACACCGTCATCCCGAACCCGAACCATGACAGTCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis