Browse Element(s) Details


OsAffx.31549.1.S1_x_at

Description tigr:9630.m05040
TID=OsAffx.31549.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5131011/11TCP family transcription factor containing protein
LOC_Os07g045104/11TCP family transcription factor containing protein
LOC_Os12g020902/11TCP family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31549.1.S1_x_at--767--1911Chr02:31411200..31411224 (25 bp)
ACGTGGCGGATGAGCCCGGTGGCGT
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--806--3973Chr07:1988429..1988453 (25 bp)
CGGGCGAGAAGGACAAGCACAGCAA
LOC_Os07g04510
OsAffx.31549.1.S1_x_at--379--2151Chr02:31411244..31411306 (25 bp)
ACAGCAAGACTGTCGGTGCCAACGT
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--1094--2751Chr02:31411288..31411311 (24 bp)
AAGACTGTCGGTGCCAACGTCCATC
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--109--1951Chr02:31411290..31411314 (25 bp)
ACTGTCGGTGCCAACGTCCATCGCG
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--497--894Chr07:1988705..1988726 (22 bp)
AGGCGCGCACGAGGAAGGCTACGGT
LOC_Os07g04510
OsAffx.31549.1.S1_x_at--172--5894Chr07:1988800..1988819 (20 bp)
GAGCGCATCGCGAAGTTGAGAGTGT
LOC_Os07g04510
OsAffx.31549.1.S1_x_at--69--1633Chr07:1988884..1988908 (25 bp)
AGCTGGATCAGGAAGCCGTCGACGC
LOC_Os07g04510
OsAffx.31549.1.S1_x_at--77--4351Chr02:31411678..31411702 (25 bp)
CCAGGGAGCGGCGACTCGTGCTCGT
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--1133--9411Chr02:31411693..31411717 (25 bp)
TCGTGCTCGTGCTCCGATGCGAAGC
LOC_Os02g51310
OsAffx.31549.1.S1_x_at--530--9091Chr02:31411696..31411720 (25 bp)
TGCTCGTGCTCCGATGCGAAGCCGG
LOC_Os02g51310
Target Sequence 
ACGTGGCGGATGAGCCCGGTGGCGTGCGGGCGAGAAGGACAAGCACAGCAAGACTGTCGGTGCCAACGTCCATCGCGTTC
TACGACATCCANGACCNCCTCGGCGTNNACCNACCAAGCAAGNCCATCGAGTGNCTCATCTGCGCCGCNNNNNNNNNNNT
CNNNNNNNTCNNGTCGCTCGACTNCTCNNTNGTCCTCCCCAACNCCGCCCAGCTCCTCACCCGCNNNNNNNGGAGGCCGT
CGAGCGGGCAGCCTTCGGAGGANCAGGCGCGCACGAGGAAGGCTACGGTGGCGGNGTCNCNTNGGAAGTCGGGNGAGAAG
AGGCGGAAGACGAGGTCGGGGTGNGCNGCGNGGANGGCGGAGCGCATCGCGAAGTTGAGAGTGTGGAGGGAGGGGTGGAT
GCCGAGGCGCGAGGCGAGCACCTCGGCGACGTCGGGCGGCCAGAGCTGGATCAGGAAGCCGTCGACGCCAGGGAGCGGCG
ACTCGTGCTCGTGCTCCGATGCGAAGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31549.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis