Browse Element(s) Details


OsAffx.31559.2.S1_at

Description tigr:9639.m00238
TID=OsAffx.31559.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0331011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03290Os.15801.1.S1_x_at10/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03290OsAffx.30792.1.S1_at5/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03300Os.35020.1.S1_at11/1111+1232929..1234980NAC domain transcription factor, putative, expressed
LOC_Os11g03310OsAffx.31559.2.S1_at11/1111+1240174..1241368No apical meristem protein
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010072biological_processprimary shoot apical meristem specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31559.2.S1_at--1141--9391Chr11:1240786..1240810 (25 bp)
TCGTCTCAATCCCAACGAATGGGTT
LOC_Os11g03310
OsAffx.31559.2.S1_at--463--1511Chr11:1240866..1240890 (25 bp)
AGCAGCCTGCCGTTGATCAAGCCGA
LOC_Os11g03310
OsAffx.31559.2.S1_at--638--431Chr11:1240901..1240925 (25 bp)
ATCTTTCAGCTAGATGACATCTTCG
LOC_Os11g03310
OsAffx.31559.2.S1_at--911--2431Chr11:1240988..1241012 (25 bp)
AACAATGCGGTTCATTCCTCCGTTT
LOC_Os11g03310
OsAffx.31559.2.S1_at--44--9491Chr11:1241012..1241036 (25 bp)
TCTGCAGGTACGACGATGACTAGTA
LOC_Os11g03310
OsAffx.31559.2.S1_at--319--331Chr11:1241027..1241051 (25 bp)
ATGACTAGTACGACTACCGCCAGTA
LOC_Os11g03310
OsAffx.31559.2.S1_at--838--1691Chr11:1241064..1241088 (25 bp)
AGCCAAACTGCTATAGTGCGCCTCT
LOC_Os11g03310
OsAffx.31559.2.S1_at--620--5351Chr11:1241207..1241231 (25 bp)
GAAGATATCATTGCTGTCCCGGATT
LOC_Os11g03310
OsAffx.31559.2.S1_at--714--6551Chr11:1241228..1241252 (25 bp)
GATTATGGTACGCTACTGCCGAGCA
LOC_Os11g03310
OsAffx.31559.2.S1_at--160--1071Chr11:1241259..1241283 (25 bp)
AGGGTTCATCAATAAGGTCGGCGAC
LOC_Os11g03310
OsAffx.31559.2.S1_at--992--4091Chr11:1241280..1241304 (25 bp)
CGACGGCTGGAGTTTCGCAGCAGAA
LOC_Os11g03310
Target Sequence 
TCGTCTCAATCCCAACGAATGGGTTGTGTGCAAGGTGTTCCACAAGAAGCAGGGAGACGAAGCCATCAACAACCAGCAGC
AGCAGCCTGCCGTTGATCAAGCCGACGACGACGACATCTTTCAGCTAGATGACATCTTCGCCGACCCCAGCATCTACGAC
TTCAGCAACTCATCTGCCAACATCTTGTCGGCGCCGCCCAACAACAATGCGGTTCATTCCTCCGTTTCTGCAGGTACGAC
GATGACTAGTACGACTACCGCCAGTAGCTTCCAGCATCAGCCAAACTGCTATAGTGCGCCTCTGCAGCAGCACGTCTCCT
CTTGGAATAATACGCCTGGAGCTGGAGGAGCCCATGGAATTGGAAGCAGCTACTACAACTTGCAGCAGCAGCAGCAGCAG
GCAGCAATGGTGAAAGACCTAGAAGATATCATTGCTGTCCCGGATTATGGTACGCTACTGCCGAGCAGCAACAAGGGTTC
ATCAATAAGGTCGGCGACGGCTGGAGTTTCGCAGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31559.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis